Plant FIBer expression Database

Potri.004G172100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G21070 595 / 0 FIO1 FIONA1, methyltransferases (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G131700
[exp]
566 / 0 AT2G21070 387 / 7e-135 FIONA1, methyltransferases (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025061
[exp]
668 / 0 AT2G21070 567 / 0.0 FIONA1, methyltransferases (.1.2.3)
Lus10034481
[exp]
355 / 9e-121 AT2G21070 214 / 4e-67 FIONA1, methyltransferases (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF05971 Methyltransf_10 RNA methyltransferase
Representative CDS sequence
>Potri.004G172100.1 pacid=42795753 polypeptide=Potri.004G172100.1.p locus=Potri.004G172100 ID=Potri.004G172100.1.v4.1 annot-version=v4.1
ATGCCAAGCAAGAAAAACAAGAGAAAGAGACCCGAACGACCCACCATCCACCCCAAAAACAAATACTCCGATAACCCACCTGATTTTTCTGTCTTAGCTT
CTCTCTACCCGTCTCTCAAGCCTTTTGTTTTTTACTCTCGCGATGGTCGACCTCGAATTGACTGGACCGATTACAACTCGACCCGAGAACTCACCCGGGT
CCTGCTTCTCCATGATCATGGCCTCAACTGGTGGATTCCTGATGGCCAGTTATGCCCTACAGTGCCAAATAGATCGAACTACATTCATTGGATCGAGGAT
CTTTTGTCATCGGATATCATTCCAAAGAATAACAACAATGGTGATATTGTGAGAGGTTTTGATATAGGCACTGGAGCTAACTGCATTTACCCTCTACTTG
GTGCCTCTCTTCTTGGATGGACTTTTGTCGGGTCAGATGTGACTGATGTAGCAGTGGAGTGGGCAGAGAAAAATGTTAAATGTAATCAACATATATCAGA
ACTAATTGAAATCAGAAAGGTCACAGATTGTCAAGGCACCATTTCTATTGAAGATTCAAATTGTGGAGAGTCGGTCAATTGTGAAAATAAAATGGATGGA
AATGCGACTGTGGTCGAGGAGGCAAAGCTTTTGCCCTCATCTTCTTTTGATCCTCCATTGGATATGAATAAGTATTCTGGACCACCTTTACTTCTTGGTG
TAGTCAGAGATGGTGAGAAGTTTGATTTCTGCATGTGTAATCCCCCATTTTTTGAGACCATGGAGGAAGCAGGACTGAATCCCAAAACTTCTTGTGGTGG
GACTCCTGAGGAGATGGTTTGCCCTGGTGGAGAGAAGGCTTTTATCACTTGTATAATTGAAGATAGTGTAGTGTTGAAGGAGTCCTTTCGGTGGTTTACT
TCAATGGTTGGAAGGAAAGTGAACCTCAAATTCCTTACCTCAAAGCTTCGGGAAGTTGGAGTCACTATAGTAAAGACCACTGAATTTGTCCAAGGGCAAA
CTTGTCGGTGGGGGCTTGCTTGGTCTTTTGTGCCTCCTGTCAGGAAAATAATATCTCCTCTGGTGCAGAAGAATAGCCTATCTTTCACTCTTGAGGGTCT
TCAACGGCAATTCAGTGCCTTTCATGTATTACAATCTATTGAGTCCTTTTTCTGCCTTGGGGGTGCATCCTGCAAATTGAATGCCTCTTCATTTGTTGTT
GATATCACTGCCTCAAATGACCAGTGCAAAGCAATCCTGAGGGACGAGGCAAAGCATCCCAATGGAGCCGCCACTTGCAACCCTTTGGAGGCATCCCATA
GTTCGAGTTATTTGCACCCTCCTTCGAATAACTTATCTTTTTGCATATCGGTGTTTCAGCAAATCCCAGGCACCCTTTTGGTGAAAGCATCATTACAGCA
TGGAGATGGCCCAGTCCCAGGAGTGTTCTCATTGACAATCCAACAATTGGAGAAAACTTTGAGATGCAAGTTTTGTAGGGAAAAGGCCACTCACAACTAA
AA sequence
>Potri.004G172100.1 pacid=42795753 polypeptide=Potri.004G172100.1.p locus=Potri.004G172100 ID=Potri.004G172100.1.v4.1 annot-version=v4.1
MPSKKNKRKRPERPTIHPKNKYSDNPPDFSVLASLYPSLKPFVFYSRDGRPRIDWTDYNSTRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIED
LLSSDIIPKNNNNGDIVRGFDIGTGANCIYPLLGASLLGWTFVGSDVTDVAVEWAEKNVKCNQHISELIEIRKVTDCQGTISIEDSNCGESVNCENKMDG
NATVVEEAKLLPSSSFDPPLDMNKYSGPPLLLGVVRDGEKFDFCMCNPPFFETMEEAGLNPKTSCGGTPEEMVCPGGEKAFITCIIEDSVVLKESFRWFT
SMVGRKVNLKFLTSKLREVGVTIVKTTEFVQGQTCRWGLAWSFVPPVRKIISPLVQKNSLSFTLEGLQRQFSAFHVLQSIESFFCLGGASCKLNASSFVV
DITASNDQCKAILRDEAKHPNGAATCNPLEASHSSSYLHPPSNNLSFCISVFQQIPGTLLVKASLQHGDGPVPGVFSLTIQQLEKTLRCKFCREKATHN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G21070 FIO1 FIONA1, methyltransferases (.1... Potri.004G172100
[exp]
0 1
AT4G19070 Putative membrane lipoprotein ... Potri.001G132400
[exp]
1.00 0.8349
AT2G39910 ARM repeat superfamily protein... Potri.008G063500
[exp]
12.96 0.7542
AT1G60160 Potassium transporter family p... Potri.010G094400
[exp]
14.07 0.8086
Potri.016G007450
[exp]
14.42 0.7507
AT2G24370 Protein kinase protein with ad... Potri.006G078500
[exp]
19.79 0.7312
AT3G16910 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-... Potri.010G141501
[exp]
22.44 0.7625
AT1G30520 AAE14 acyl-activating enzyme 14 (.1) Potri.011G164100
[exp]
33.46 0.7606
AT3G08890 Protein of unknown function, D... Potri.006G104000
[exp]
38.34 0.6985
AT5G52990 SNARE-like superfamily protein... Potri.012G016400
[exp]
54.99 0.7290
AT3G24800 PRT1 proteolysis 1 (.1) Potri.002G241900
[exp]
55.74 0.7183

Potri.004G172100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.