Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) AT4G36040 114 / 1e-32 J11 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) AT4G13830 75 / 2e-17 J20 DNAJ-like 20 (.1.2) AT3G13310 73 / 9e-17 Chaperone DnaJ-domain superfamily protein (.1) AT1G80030 69 / 3e-14 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT4G37480 65 / 9e-13 Chaperone DnaJ-domain superfamily protein (.1) AT4G39960 64 / 2e-12 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G17830 62 / 1e-11 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G77930 61 / 1e-11 Chaperone DnaJ-domain superfamily protein (.1.2) AT2G22360 61 / 2e-11 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131800 [exp] 177 / 1e-58 AT2G17880 109 / 9e-32 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020700 [exp] 128 / 2e-38 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020800 [exp] 124 / 1e-36 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G113100 [exp] 121 / 6e-36 AT2G17880 139 / 6e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G240700 [exp] 119 / 1e-34 AT2G17880 105 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G469600 [exp] 85 / 3e-21 AT3G13310 120 / 4e-35 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G001301 [exp] 84 / 3e-21 AT3G13310 102 / 2e-28 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G166500 [exp] 84 / 4e-21 AT3G13310 115 / 4e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G107600 [exp] 76 / 7e-18 AT3G13310 109 / 4e-31 Chaperone DnaJ-domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034484 [exp] 127 / 2e-38 AT4G36040 100 / 3e-28 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10025060 [exp] 120 / 6e-36 AT4G36040 102 / 7e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10028453 [exp] 119 / 6e-35 AT2G17880 146 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1) Lus10041906 [exp] 117 / 5e-34 AT4G36040 144 / 8e-45 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10017263 [exp] 114 / 1e-32 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10013558 [exp] 84 / 6e-22 AT4G36040 82 / 1e-21 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10003150 [exp] 85 / 9e-21 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10032957 [exp] 81 / 4e-20 AT3G13310 109 / 2e-31 Chaperone DnaJ-domain superfamily protein (.1) Lus10002355 [exp] 83 / 5e-20 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10002356 [exp] 82 / 1e-19 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.004G172300.1 pacid=42795172 polypeptide=Potri.004G172300.1.p locus=Potri.004G172300 ID=Potri.004G172300.1.v4.1 annot-version=v4.1 ATGCTTGCAACTCCTACCACTTCATTTCTCCAAATCACCACCACAAAGACACCTTGCTCAAGCCCTTTTAGTGGCGAGTCCTATCCACTTAAACCTAGAG CATCTTTTACTACTGCTTCACAGGCCAAAAAATCACAAGGGAGCGTTGACTCAATGGCTACAACCTCCTCATTCTACGAAGTGCTAGGGCTTCCAATGAG TGCTAGTGGCCATGAAATAAAGGCTGCTTATAGAAGACTAGCAAGAACTTGCCACCCTGATGTTGTGTCCATGAATCAGAAAGAAATGTCATCCACTGAG TTCATTAAAATCCATGCAGCATATTCAACACTGTCAGACCCAGATAAACGCGCAAGTTATGATAGAGATCTTTTTAGAAACAGTAGGCCTTTCGGGTCTT CTTCTATGAGGTCGGCAACAATGGCAGCTGCTTCTGGATATACTAGTAGGAACTGGGAGACTGACCAGTGTTGGTAG
AA sequence Show only first row Show all	>Potri.004G172300.1 pacid=42795172 polypeptide=Potri.004G172300.1.p locus=Potri.004G172300 ID=Potri.004G172300.1.v4.1 annot-version=v4.1 MLATPTTSFLQITTTKTPCSSPFSGESYPLKPRASFTTASQAKKSQGSVDSMATTSSFYEVLGLPMSASGHEIKAAYRRLARTCHPDVVSMNQKEMSSTE FIKIHAAYSTLSDPDKRASYDRDLFRNSRPFGSSSMRSATMAAASGYTSRNWETDQCW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17880			Chaperone DnaJ-domain superfam...		Potri.004G172300 [exp]	0	1
AT2G17880			Chaperone DnaJ-domain superfam...		Potri.005G240700 [exp]	1.00	0.8945
AT4G01030			pentatricopeptide (PPR) repeat...		Potri.014G097000 [exp]	10.67	0.8815
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Potri.019G031900 [exp]	15.71	0.8184
					Potri.008G210873 [exp]	18.65	0.8383
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Potri.001G467100 [exp]	23.62	0.8354
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.014G171600 [exp]	31.41	0.8333	Pt-SUB1.2
AT3G26740		CCL	CCR-like (.1)		Potri.001G066400 [exp]	34.78	0.8376	Pt-CR9.2
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.001G367500 [exp]	42.70	0.8144
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Potri.001G193300 [exp]	44.27	0.8068
AT4G20130		PTAC14	plastid transcriptionally acti...		Potri.003G155100 [exp]	45.74	0.8112

Compare expression of checked genes

Potri.004G172300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.