Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21840 94 / 8e-20 Cysteine/Histidine-rich C1 domain family protein (.1) AT1G66450 93 / 1e-19 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G19660 93 / 2e-19 Cysteine/Histidine-rich C1 domain family protein (.1) AT3G26240 92 / 5e-19 Cysteine/Histidine-rich C1 domain family protein (.1) AT4G13130 89 / 3e-18 Cysteine/Histidine-rich C1 domain family protein (.1) AT3G46800 82 / 7e-16 Cysteine/Histidine-rich C1 domain family protein (.1) AT3G27473 81 / 9e-16 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G40320 80 / 2e-15 Cysteine/Histidine-rich C1 domain family protein (.1) AT4G26380 80 / 3e-15 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G37620 79 / 3e-15 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G020100 [exp] 119 / 1e-27 AT2G21840 239 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.012G140133 [exp] 102 / 3e-25 AT4G01930 68 / 9e-14 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044200 [exp] 94 / 7e-20 AT5G22355 203 / 3e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047300 [exp] 92 / 3e-19 AT5G22355 234 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047000 [exp] 92 / 5e-19 AT5G22355 237 / 1e-68 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G057800 [exp] 91 / 6e-19 AT5G22355 273 / 4e-82 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044800 [exp] 90 / 1e-18 AT5G22355 260 / 3e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044600 [exp] 86 / 2e-17 AT5G22355 260 / 7e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047200 [exp] 86 / 3e-17 AT5G22355 242 / 3e-70 Cysteine/Histidine-rich C1 domain family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003919 [exp] 53 / 2e-07 AT2G44380 179 / 2e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10037470 [exp] 51 / 3e-06 AT2G44380 177 / 5e-52 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10028723 [exp] 49 / 1e-05 AT1G20990 269 / 9e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10017477 [exp] 47 / 3e-05 AT2G16050 340 / 4e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10016256 [exp] 44 / 0.0003 AT2G27660 107 / 8e-26 Cysteine/Histidine-rich C1 domain family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G172400.2 pacid=42796424 polypeptide=Potri.004G172400.2.p locus=Potri.004G172400 ID=Potri.004G172400.2.v4.1 annot-version=v4.1 ATGAAGGGAATCAAGTACCTAGAGCATTTCAGAGGTGAGCATCAATTGAAGCTGATCGAGAAGGTTGACGAAGCTAATCTAGCTGTATGTAAAGCTTGCA AGGAACACTGTCGTGATCCGTATTATTTTAGTTGCAGCGTATGCGATTTAAACCTCCATGATTTATGTGCAAATTTGCCATCATGGTTCTCAAATCCTTT TCATCCCCACACGCTTTCAATCTTTCAGACTCACATGATAGGCGAGCCGGAACAGTTTCAGTGCCACGCCTGTTTTAGGAAAATAGATGGCTACACCTAT GGCTACAAATGCAATGAGTGCCTCATCTATCTAGATGTTGAATGTGCTTTACTAAGACCTGTCATAAAAGAAGATGAAGATCATGTTCTAATCCATTTTT CCCATCTTCATCCATTAGTCCTAGTTGCTACTGAACTGGAGGATGTTAATGATGACCCCCCATGCTGCTACTTGTGTTGGGAATTTATAATTAGCTCGGT CCTGTTCTACAAGTGTGAACCCTGCAGATTCTATCTTCACAAATCATGTGCTGAATTGAAGTTGCCAAAATGTTTGGATCACTTCTATCACCGTTGCTCT CTCGCTCTATGCACCGAAAGAAATCCTTATACTTGCAATGCTTGTTTGAGGAATCGTGGTGGCTTCCACTACCTCTGCGACAATTGCAACTTCAGGCTCG ATGTCGACTGCGCTTTATTGCCTGAAAAAATGAAATCTGAAGGTCAAGATCAGCTCTACCACCACCCTATGCACGGGCATCCCCTAACACTTGTTGATGT AACTGATGATGAAGCAATTCACTGCGTCGCTTGCCAGAAAAGCTGTTGTGACAAGGCCTATGTCTGTCGTTGGGCCGGGGTATGCAGGTTTTTCCTCCAC CAACAATGCTTCCTTCTTCCTGAAAAGATATTCCAACCGCATTATCCAGGCCTCGAGTTAAAGTTGACTCCAGAATGTTTTCCTAAAGCAAGATGCATTT CCTGTTATAATTTATGCAATGGCTTATTCTACCGCACTCCGTCCAAATTACCGAAGAAAGTGAGAAAAAAACTGGGTGGCTTACCATTACCATTCAACGT GCACGTTAAATGTCCGGTGGAGGTTTCCACTATAACATATCAAGCTCACCCTCACAATCTTACATTTATCGAGAACATCATAGGCAATGATATTGACGAC AACAATGAATTCAAAGGTATAAAGTGCAAGGCCTGCGGCAAGGATTGCGTATCATCATCACCTCTGTTTCGTTGTGCCCGATGCAATTACAATCTTCATG TTGAATGTGGTCCCTTACCGTGTATCATTCCGTTCAAAAGTGAATTACATACACATCCACTCAGGCTTATCTATTCTCCGGTGGACGGCGAAGACAAAAA TGACGTGGATGTGTTTTACTGCGATGAGTGCGAAAACAAAAGAGATCCAAGGCTGCCAGTTTATTGTTGCTCTGAGGGCTGCCCCTACATTGCTGAGATT AAATGCGTAATATCCGAGGTAAAACGTTCATTATTGGGATATAATGGAGAAGTGGAGTTGAAGTCCTTGATCACTAAGATGGCTGGGAAGGTGATTGGCA AATATTATCTTCCTCCTCAGGAAACTGGAAGGGGCAGTGGAACAAAGAATGAAGATTGCAATGAAATTATTAGTCGTTTCAGAATTGAGGACACAGACTT GTATCGAAGCATTTCTATGGCTGCAAGACACTGGGCTCAGAATGATACCACCAAGAGCATGGGATCACAAGCTTCTCTGTTTCCAAATGAGGCTCTTACT CTTATGAACTTATTATATGGAGGCAAAGATATATTTAAAGAAGATAGGCCGATTTTCAAGGTCGAAGATCATTTTTTGAAGTCAGACTTTGCATACATAA GGGAGGCACTAGGTGATGTTATCCTTGCAAAACCCACTTTGCAAAATTAA
AA sequence Show only first row Show all	>Potri.004G172400.2 pacid=42796424 polypeptide=Potri.004G172400.2.p locus=Potri.004G172400 ID=Potri.004G172400.2.v4.1 annot-version=v4.1 MKGIKYLEHFRGEHQLKLIEKVDEANLAVCKACKEHCRDPYYFSCSVCDLNLHDLCANLPSWFSNPFHPHTLSIFQTHMIGEPEQFQCHACFRKIDGYTY GYKCNECLIYLDVECALLRPVIKEDEDHVLIHFSHLHPLVLVATELEDVNDDPPCCYLCWEFIISSVLFYKCEPCRFYLHKSCAELKLPKCLDHFYHRCS LALCTERNPYTCNACLRNRGGFHYLCDNCNFRLDVDCALLPEKMKSEGQDQLYHHPMHGHPLTLVDVTDDEAIHCVACQKSCCDKAYVCRWAGVCRFFLH QQCFLLPEKIFQPHYPGLELKLTPECFPKARCISCYNLCNGLFYRTPSKLPKKVRKKLGGLPLPFNVHVKCPVEVSTITYQAHPHNLTFIENIIGNDIDD NNEFKGIKCKACGKDCVSSSPLFRCARCNYNLHVECGPLPCIIPFKSELHTHPLRLIYSPVDGEDKNDVDVFYCDECENKRDPRLPVYCCSEGCPYIAEI KCVISEVKRSLLGYNGEVELKSLITKMAGKVIGKYYLPPQETGRGSGTKNEDCNEIISRFRIEDTDLYRSISMAARHWAQNDTTKSMGSQASLFPNEALT LMNLLYGGKDIFKEDRPIFKVEDHFLKSDFAYIREALGDVILAKPTLQN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21840			Cysteine/Histidine-rich C1 dom...		Potri.004G172400 [exp]	0	1
AT3G26790	B3	FUS3	FUSCA 3, AP2/B3-like transcrip...		Potri.004G220300 [exp]	11.09	0.7888
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G136501 [exp]	17.66	0.7729
AT5G45540			Protein of unknown function (D...		Potri.001G146800 [exp]	33.46	0.7749
AT5G51440			HSP20-like chaperones superfam...		Potri.006G034600 [exp]	48.06	0.7468
AT5G11290			Plant protein of unknown funct...		Potri.003G208400 [exp]	53.57	0.7629
AT4G34440		AtPERK5	proline-rich extensin-like rec...		Potri.004G153600 [exp]	61.96	0.6891
AT4G05030			Copper transport protein famil...		Potri.006G001900 [exp]	63.00	0.7449
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.003G025100 [exp]	66.93	0.7329
AT1G63830			PLAC8 family protein (.1.2.3)		Potri.001G101100 [exp]	78.23	0.7151
					Potri.017G147700 [exp]	83.00	0.7458

Compare expression of checked genes

Potri.004G172400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.