Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34940 1020 / 0 ARO1 armadillo repeat only 1 (.1) AT5G66200 893 / 0 ARO2 armadillo repeat only 2 (.1) AT4G36030 790 / 0 ARO3 armadillo repeat only 3 (.1) AT3G26600 364 / 2e-117 ARO4 armadillo repeat only 4 (.1) AT1G77460 45 / 0.0003 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) AT1G44120 44 / 0.0005 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1) AT1G02690 43 / 0.0009 IMPA-6 importin alpha isoform 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131900 [exp] 1175 / 0 AT4G34940 986 / 0.0 armadillo repeat only 1 (.1) Potri.005G113000 [exp] 946 / 0 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Potri.015G082800 [exp] 221 / 3e-63 AT3G26600 610 / 0.0 armadillo repeat only 4 (.1) Potri.010G045500 [exp] 214 / 4e-61 AT3G26600 632 / 0.0 armadillo repeat only 4 (.1) Potri.014G158700 [exp] 44 / 0.0003 AT2G05810 506 / 1e-174 ARM repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025059 [exp] 1011 / 0 AT4G34940 973 / 0.0 armadillo repeat only 1 (.1) Lus10041905 [exp] 899 / 0 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Lus10028452 [exp] 897 / 0 AT5G66200 965 / 0.0 armadillo repeat only 2 (.1) Lus10027837 [exp] 572 / 0 AT4G34940 574 / 0.0 armadillo repeat only 1 (.1) Lus10027838 [exp] 416 / 5e-143 AT4G34940 396 / 2e-135 armadillo repeat only 1 (.1) Lus10026695 [exp] 365 / 6e-118 AT3G26600 656 / 0.0 armadillo repeat only 4 (.1) Lus10037086 [exp] 343 / 1e-113 AT5G66200 354 / 3e-118 armadillo repeat only 2 (.1) Lus10005065 [exp] 249 / 2e-79 AT4G34940 239 / 2e-76 armadillo repeat only 1 (.1) Lus10036897 [exp] 226 / 2e-66 AT5G66200 261 / 2e-79 armadillo repeat only 2 (.1) Lus10004620 [exp] 209 / 6e-59 AT3G26600 661 / 0.0 armadillo repeat only 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Potri.004G172500.1 pacid=42796093 polypeptide=Potri.004G172500.1.p locus=Potri.004G172500 ID=Potri.004G172500.1.v4.1 annot-version=v4.1 ATGGCGGACATCGTGAAAGAGATCTTGGCAAGGCCAATACAATTAGCAGACCAAGTCACAAAATCAGCAGATGAGGCACAATCTTTCAAACAAGATTGTC TAGAACTCAAAGCCAAAACAGAGAAGCTTGCTGGGCTTTTACGCCAAGCCGCTCGTGCCAGTAATGATCTTTACGAACGTCCAACGAGGCGAATCATAGA TGACACCGAACAAGTCCTCGACAAGGCCCTCACTCTTGTTATCAAATGCCGCGCCAGCGGAATTATGAAACGAATGTTCACTATCATCCCTGCTGCCGCA TTTCGAAAAATATCGACGCAGCTAGAAAATTCAATAGGAGATGTTTCTTGGCTCTTGCGAGTCTCAGCTCCCGCTGATGATCGCGACGATGAGTATTTAG GCTTGCCTCCTATTGCCGCCAATGAGCCAATTCTGTGTCTCATATGGGAACAAATTGCAATACTTTATACGGGGAGTTTAGAAGACAGATCGGATGCTGC AGCTTCATTGGTTTCCTTGGCTAGAGATAATGACAGGTACGGAAAGTTGATTATAGAGGAAGGTGGGGTTGCACCATTGTTAAAGTTGGCTAAAGATGGC AAAATGGAAGGTCAGGAAAATGCTGCCAGAGCTATTGGGTTATTAGGACGTGATCCGGAAAGCGTCGAACAGATTGTGAATGCTGGGGTTTGCACCGTGT TTGCCAAAATCCTCAAAGAAGGTCACATGAAAGTTCAGGTTGTGGTGGCTTGGGCTGTTTCTGAATTAGCTGCACATCATCCGAAATGCCAAGACCATTT TGCGCAAAACAACACAATTCGATTTCTAGTCAGTCATCTTGCGTTTGAGACTGTCCAAGAACACAGTAAGTACGCAATTGCAAGCAAAAATAAAATGTCG ATTCATTCAGTTTTGATGGCTAGTAGTGATACTAGTCCTGATGAAGATGAACCCGCCACAAAAATTCATCATCCAGCGGATAATAAAACTCCTGCTCCCA TCCAGATGCACAGTGTGGTGGCCAATACCATGGCAATGAGAAGTCAGACTCTTAGCAATAACAAACCAGCACAAACCCAAACCCAAACCCAAAATCTCTC AACAAATCACCCCAATACTAATCATCCGAACCATGCTAAAGGCAACCACAATATTCCGAAACAACAGCATCATCACCATGTGTCATTGGCCGGGACTAGC ATCAAGGGTAGGGAATTTGAAGATCCTGCTACCAAAGCACAAATGAAGGCAATGGCAGCAAGAGCACTTTGGCAACTCGCAAAGGGAAACGTCACCGTAT GCCGTACCATCACAGAGTCAAGAGCGCTTTTATGCTTTGCAGTTTTGTTGGAGAAAGGTCATGATGAAGTTCAATCCTATTCAGCAATGGCATTGATGGA AATAACAGCAGTAGCTGAACAAAATTCTGACTTGAGACGCTCCTCGTTCAAGCCCACATCCCCTGCTGCCAGAGCAGTTGTTGATCAGTTACTAAAAGTG GTTGAGAAAGCAGTCTCAGACCTCCTCATACCATGCATCCAAGCTATTGGCAACTTGGCTAGGACATTTAGAGCAACAGAAACCAGGATGATTGGGCCAT TGGTGAAGCTATTAGACGAAAAGGAACCTGAGGTTACAATGGAGGCAGCAATTGCCCTGAACAAGTTCGCATCGCCAGACAATTTCCTCTGCGTGAATCA CTCCAAGGCTATTATTGCTGAAGGAGGTGCCAAACACCTAATTCAACTTGTTTACTTCGGTGAACAAATGGTTCAAGTTCTCTCTTTGATTCTCCTTTGC TACATTTCATTGCAATGCCCTGACAGTGAGGTTCTTGCGAACGAAGAGGTCCTTATTGTGCTAGAGTGGTCAACAAAGCAGGCTCATTTGTTACAAGAAC CTGAAATCGAATCTTTGTTACCGGAAGCAAAGAGTAGATTGGAACTGTATCAATCAAGAGGTTCGAGAGGATTCTATTAA
AA sequence Show only first row Show all	>Potri.004G172500.1 pacid=42796093 polypeptide=Potri.004G172500.1.p locus=Potri.004G172500 ID=Potri.004G172500.1.v4.1 annot-version=v4.1 MADIVKEILARPIQLADQVTKSADEAQSFKQDCLELKAKTEKLAGLLRQAARASNDLYERPTRRIIDDTEQVLDKALTLVIKCRASGIMKRMFTIIPAAA FRKISTQLENSIGDVSWLLRVSAPADDRDDEYLGLPPIAANEPILCLIWEQIAILYTGSLEDRSDAAASLVSLARDNDRYGKLIIEEGGVAPLLKLAKDG KMEGQENAARAIGLLGRDPESVEQIVNAGVCTVFAKILKEGHMKVQVVVAWAVSELAAHHPKCQDHFAQNNTIRFLVSHLAFETVQEHSKYAIASKNKMS IHSVLMASSDTSPDEDEPATKIHHPADNKTPAPIQMHSVVANTMAMRSQTLSNNKPAQTQTQTQNLSTNHPNTNHPNHAKGNHNIPKQQHHHHVSLAGTS IKGREFEDPATKAQMKAMAARALWQLAKGNVTVCRTITESRALLCFAVLLEKGHDEVQSYSAMALMEITAVAEQNSDLRRSSFKPTSPAARAVVDQLLKV VEKAVSDLLIPCIQAIGNLARTFRATETRMIGPLVKLLDEKEPEVTMEAAIALNKFASPDNFLCVNHSKAIIAEGGAKHLIQLVYFGEQMVQVLSLILLC YISLQCPDSEVLANEEVLIVLEWSTKQAHLLQEPEIESLLPEAKSRLELYQSRGSRGFY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Potri.004G172500 [exp]	0	1
AT1G13330		AHP2	Arabidopsis Hop2 homolog (.1)		Potri.010G127101 [exp]	2.00	0.8168
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014374 [exp]	15.77	0.8001
					Potri.019G002502 [exp]	19.33	0.7747
					Potri.019G049901 [exp]	21.16	0.7636
AT1G13130			Cellulase (glycosyl hydrolase ...		Potri.010G049800 [exp]	31.60	0.7008
AT4G02550			unknown protein		Potri.001G157750 [exp]	42.66	0.7752
AT3G07400			lipase class 3 family protein ...		Potri.002G249400 [exp]	46.09	0.7494
AT1G22030			unknown protein		Potri.003G018700 [exp]	49.08	0.6630
AT5G13420			Aldolase-type TIM barrel famil...		Potri.003G161900 [exp]	52.53	0.7739
AT1G13340			Regulator of Vps4 activity in ...		Potri.010G127000 [exp]	52.74	0.7493

Compare expression of checked genes

Potri.004G172500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.