Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22370 466 / 2e-161 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22340 457 / 4e-158 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22400 452 / 6e-156 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 446 / 8e-154 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 444 / 1e-152 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G78270 437 / 3e-150 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT5G05860 211 / 1e-62 UGT76C2 UDP-glucosyl transferase 76C2 (.1) AT3G55700 209 / 5e-62 UDP-Glycosyltransferase superfamily protein (.1) AT3G46670 207 / 2e-61 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT5G59590 200 / 1e-58 UGT76E2 UDP-glucosyl transferase 76E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G023700 [exp] 641 / 0 AT1G22370 476 / 2e-165 UDP-glucosyl transferase 85A5 (.1.2) Potri.016G021500 [exp] 605 / 0 AT1G22360 501 / 3e-175 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G022000 [exp] 595 / 0 AT1G22360 499 / 1e-174 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G022100 [exp] 594 / 0 AT1G22380 489 / 2e-170 UDP-glucosyl transferase 85A3 (.1) Potri.016G022400 [exp] 591 / 0 AT1G22360 495 / 4e-173 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023600 [exp] 583 / 0 AT1G22380 526 / 0.0 UDP-glucosyl transferase 85A3 (.1) Potri.007G132400 [exp] 581 / 0 AT1G22340 527 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.016G022500 [exp] 564 / 0 AT1G22340 535 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.006G023151 [exp] 556 / 0 AT1G22400 521 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007421 [exp] 491 / 2e-171 AT1G22400 529 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10019364 [exp] 488 / 6e-170 AT1G22400 523 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10010665 [exp] 445 / 3e-153 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10031388 [exp] 444 / 9e-153 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10017542 [exp] 441 / 2e-151 AT1G22400 499 / 4e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10041055 [exp] 441 / 2e-151 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10032220 [exp] 436 / 8e-150 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024583 [exp] 433 / 1e-148 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032218 [exp] 430 / 2e-147 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024584 [exp] 428 / 1e-146 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.004G172700.1 pacid=42794939 polypeptide=Potri.004G172700.1.p locus=Potri.004G172700 ID=Potri.004G172700.1.v4.1 annot-version=v4.1 ATGGAATCCAAGACAGGAGCTTATAATAGGCCTCATGCTGTGGTCATTCCAATTCCATTTCAAAGCCACATAAAAGCAATGCTTAAATTGGCAAAACTAC TTCATCACAAAGGTTTTTACATAACCTTCGTCAACACAGAATTCAATCACAACCTTTTCCTGAGGTCAAGAGGCCCTCGTTCTCTAGATGGTTTGCCTGA TTTTCGTTTTGAAACCATTCCTGATGGGCTCCCTCCTTCAGATGTTGAGGCCATGACCCAAGATGAAGCTTCTCTTTTCAACTCCATTACCAAAAATTTC CTGGCTTTCTTTCAACATCTTCTTGCCAAACTCAGAAAGAATAGCTTGTCTTCGAACTCTCCTTCAGTAACTTGTATTGTTTCTGATGGTTTCATGTCGT CATTCACCATCAAAGCTGCTGAAGAAATTGGAGTTCCTGTGGTCATGTCTTTTACCATGTCTGCCTGTGGCGTTATGGCATTTAAACAACTCAATACTCT AAGGGTCAAAGGGTTAACTCCACTTAAAGCAGATGAGAGCTATCTTCACACAACTATTGACTGGATTCCAGGTATGAAAGATACATGCCTTATGGACTTT CCATTTGCTCGAAATACGAATCCAGATAACTATGCATTTAGATTCTTGATGGATAGTGTTGAGGGTGCCGTTAGGGCTTCTGCAATTATTGTTCATACCT TTGATGCATTAGAGCCAGATGTTTTGGATGGCCTGTCATCCATATTTCCTCATGTTTACGCCATTGGCCCTTACCAGTTACTTCTTAATCAAATTCCTGA AGATGGTTTAAGGTCTATTGGCTACAGTTTGAGGAAAGAGGAAGGAGATTGTCTCCAATGGCTAGACACTAAGGAACCCAAATCGGTGGTTTATGTGAAT TTCGGCAGTTTAATAGTAATAAAAGCGGAACAGCTAGTTGAGTTTGCAATGGGACTGGCTAATAGCAAGCATCCATTCCTTTGGATAATAAGGTCAGATT TGGTTATCGGTGATGCTGCAATTTTGGCAGCTGAATTTGCAGGAAAAAATCAAGAACAATGTTATATTGCCAGTTGGTGTCAACAAGAAGAAGTACTAAA TCATCCATCAGTGGGGGTTTTTTTAACTCATAGTGGTTGGAATTCAACTATTGAGAGCTTAGCTGCTGGAGTCCCAATGATTTGTTGGCCATTCTTTGCA GACCAACCAATGAATTGTAGATATACTTGCAAGGAATGGGGAATTGGCATGAAGATTGATGATATTGTCAAGAGGGAAGAAGTGGAGAAGCTTGTAAGAG AGCTAATGGAAGGAGAGAAGGGTGTGAAGATGAGGGAAAAGGCCACGGACTGGAAAAAATTGGCTGAAGAGGCAGCTGGACCAGATGGTTCATCATCCAT TAGTATAGAGAAGTTGGTCAATGAAGTGCTTTTGTCAAACAATTAG
AA sequence Show only first row Show all	>Potri.004G172700.1 pacid=42794939 polypeptide=Potri.004G172700.1.p locus=Potri.004G172700 ID=Potri.004G172700.1.v4.1 annot-version=v4.1 MESKTGAYNRPHAVVIPIPFQSHIKAMLKLAKLLHHKGFYITFVNTEFNHNLFLRSRGPRSLDGLPDFRFETIPDGLPPSDVEAMTQDEASLFNSITKNF LAFFQHLLAKLRKNSLSSNSPSVTCIVSDGFMSSFTIKAAEEIGVPVVMSFTMSACGVMAFKQLNTLRVKGLTPLKADESYLHTTIDWIPGMKDTCLMDF PFARNTNPDNYAFRFLMDSVEGAVRASAIIVHTFDALEPDVLDGLSSIFPHVYAIGPYQLLLNQIPEDGLRSIGYSLRKEEGDCLQWLDTKEPKSVVYVN FGSLIVIKAEQLVEFAMGLANSKHPFLWIIRSDLVIGDAAILAAEFAGKNQEQCYIASWCQQEEVLNHPSVGVFLTHSGWNSTIESLAAGVPMICWPFFA DQPMNCRYTCKEWGIGMKIDDIVKREEVEKLVRELMEGEKGVKMREKATDWKKLAEEAAGPDGSSSISIEKLVNEVLLSNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22370		ATUGT85A5	UDP-glucosyl transferase 85A5 ...		Potri.004G172700 [exp]	0	1
					Potri.004G231576 [exp]	1.41	0.9722
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.015G104400 [exp]	1.41	0.9629
					Potri.007G085550 [exp]	3.16	0.9524
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Potri.007G065400 [exp]	6.00	0.9619	Pt-NAC1.1
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Potri.010G107500 [exp]	11.22	0.9310
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Potri.009G054800 [exp]	11.61	0.9289
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.001G112600 [exp]	14.96	0.9466
AT3G17810		PYD1	pyrimidine 1 (.1)		Potri.015G030600 [exp]	16.49	0.9131
					Potri.004G187300 [exp]	16.97	0.9389
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Potri.016G124700 [exp]	22.64	0.9170	Pt-SOF.3

Compare expression of checked genes

Potri.004G172700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.