Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38660 367 / 8e-127 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G24180 320 / 1e-109 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT1G20030 283 / 3e-94 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75800 281 / 2e-93 Pathogenesis-related thaumatin superfamily protein (.1) AT4G36010 267 / 4e-88 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G19320 264 / 1e-87 Pathogenesis-related thaumatin superfamily protein (.1) AT2G17860 263 / 2e-87 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 259 / 4e-86 PR-5, PR5 pathogenesis-related gene 5 (.1) AT4G38670 259 / 2e-85 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT1G75030 256 / 1e-84 ATLP-3 thaumatin-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G132500 [exp] 495 / 3e-177 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G112600 [exp] 357 / 5e-123 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.002G020400 [exp] 341 / 6e-117 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G241000 [exp] 338 / 1e-115 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.005G240900 [exp] 295 / 4e-99 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G020500 [exp] 291 / 2e-97 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112700 [exp] 278 / 2e-92 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132200 [exp] 265 / 2e-87 AT4G38670 410 / 2e-145 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Potri.015G000800 [exp] 263 / 8e-87 AT5G24620 351 / 4e-120 Pathogenesis-related thaumatin superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041899 [exp] 361 / 2e-124 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10025055 [exp] 355 / 3e-123 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028447 [exp] 357 / 4e-123 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013561 [exp] 322 / 2e-109 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 315 / 8e-107 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10017265 [exp] 277 / 1e-91 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 271 / 1e-89 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 270 / 3e-89 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10034534 [exp] 269 / 1e-88 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10009058 [exp] 265 / 3e-88 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.004G173200.1 pacid=42796721 polypeptide=Potri.004G173200.1.p locus=Potri.004G173200 ID=Potri.004G173200.1.v4.1 annot-version=v4.1 ATGGGTTACTACTCTTGCTGCTTCCCCACTCTTATTTCCAGCTTTGTTCTTCTTCTTCTTGTGAGTTATAAAGGTTGTGTATTAGCTGCTACGTTCACAT TTGTAAACAAATGTGAGCACACAGTTTGGCCTGGAATTCTTGCCAATGCGGGCAGTCCTAGACTTGACAGCACCGGATTTGAGCTTCAACAAGACTCTTC TCGTTCTTTTATAGCCCCAACTGGCTGGTCTGGTCGTTTTTGGGCTCGAACTGGGTGTAATTTCGACGAATCCGGAGCCGGGTTATGCTCAACAGGTGAC TGCGGGTCGGGTCAAGTTGAATGTAACGGATTTGGAGCTGCTCCACCTGCTACATTAGCAGAGTTCACACTCGGGTCGGGTGGGCAGGATTTTTACGATG TTAGTCTTGTAGATGGGTACAATTTGCCCATGGTTGTGGAAGGTAGTGGGGGGTCGGGCATGTGCGCTTCAACGGGCTGTATATCGGATCTTAACATACA GTGTCCACAAGAACTGAGGGTTGGTGAAGGCGACGCGTGTAAGAGCGCGTGTGAAGCTTTTGGGAGCCCGGAGTACTGTTGCAGTGGCGCGTTCAATACA CCCGCCACTTGTAAACCTTCTGTTTATTCAGAGATGTTCAAGGCTGCTTGTCCTAAATCTTACAGTTATGCTTATGATGATGCAACTAGCACTTTTACTT GTAGCGGTGCTGATTATACAGTGACCTTTTGCCCTTCATCTCCAAGTCAGAAATCTTCAAGCTACTCAACGCCAACGACAGAAGGAACAACAACATCACA GGGGTCTGGCACGGGATCCGGGCTGGAATACACGGGCTCTGGTTCAGGCATTGATTCTGGGGCTGGATCTGGGACTGGATCCGGAGGAGAAACCATGCTA GCAGATGGGTCATGGTTAGCTGGTTTGGCCATGGGAGACTCGTATAAGACAGCTTCTCCTTCTGCTCTACAATCAGCAATAATGGCTTTTACGACTCTTG TCCTTATTTTTGCCCTTCTTCACTCGTAG
AA sequence Show only first row Show all	>Potri.004G173200.1 pacid=42796721 polypeptide=Potri.004G173200.1.p locus=Potri.004G173200 ID=Potri.004G173200.1.v4.1 annot-version=v4.1 MGYYSCCFPTLISSFVLLLLVSYKGCVLAATFTFVNKCEHTVWPGILANAGSPRLDSTGFELQQDSSRSFIAPTGWSGRFWARTGCNFDESGAGLCSTGD CGSGQVECNGFGAAPPATLAEFTLGSGGQDFYDVSLVDGYNLPMVVEGSGGSGMCASTGCISDLNIQCPQELRVGEGDACKSACEAFGSPEYCCSGAFNT PATCKPSVYSEMFKAACPKSYSYAYDDATSTFTCSGADYTVTFCPSSPSQKSSSYSTPTTEGTTTSQGSGTGSGLEYTGSGSGIDSGAGSGTGSGGETML ADGSWLAGLAMGDSYKTASPSALQSAIMAFTTLVLIFALLHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38660			Pathogenesis-related thaumatin...		Potri.004G173200 [exp]	0	1
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.014G027100 [exp]	1.41	0.8934	Pt-HSFB4.2
AT4G38660			Pathogenesis-related thaumatin...		Potri.009G132500 [exp]	4.24	0.8943
AT4G00752			UBX domain-containing protein ...		Potri.014G075600 [exp]	5.47	0.8694
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Potri.010G081500 [exp]	6.92	0.8178	Pt-DMC1.2
AT3G53190			Pectin lyase-like superfamily ...		Potri.006G122000 [exp]	6.92	0.8864
AT2G16700		ADF5, ATADF5	actin depolymerizing factor 5 ...		Potri.009G133100 [exp]	7.00	0.8689	Pt-ADF5.1
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Potri.012G065750 [exp]	7.07	0.8756
					Potri.016G052400 [exp]	7.41	0.8630
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.003G204500 [exp]	7.54	0.8465
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.007G110700 [exp]	8.66	0.8570

Compare expression of checked genes

Potri.004G173200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.