Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38650 753 / 0 Glycosyl hydrolase family 10 protein (.1) AT4G33830 414 / 7e-139 Glycosyl hydrolase family 10 protein (.1) AT4G33840 407 / 4e-136 Glycosyl hydrolase family 10 protein (.1) AT4G33860 407 / 9e-136 Glycosyl hydrolase family 10 protein (.1) AT4G38300 381 / 4e-130 glycosyl hydrolase family 10 protein (.1) AT4G33810 308 / 2e-98 Glycosyl hydrolase superfamily protein (.1) AT2G14690 301 / 7e-95 Glycosyl hydrolase superfamily protein (.1) AT4G33820 288 / 4e-90 Glycosyl hydrolase superfamily protein (.1) AT1G58370 281 / 3e-84 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT1G10050 272 / 3e-80 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G087900 [exp] 409 / 1e-136 AT4G33840 695 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087800 [exp] 375 / 1e-123 AT4G33840 573 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087700 [exp] 363 / 4e-119 AT4G33860 529 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087600 [exp] 337 / 4e-109 AT4G33820 506 / 4e-175 Glycosyl hydrolase superfamily protein (.1) Potri.002G113066 [exp] 281 / 2e-85 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.002G113132 [exp] 281 / 5e-84 AT1G58370 1352 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025054 [exp] 764 / 0 AT4G38650 677 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10034490 [exp] 625 / 0 AT4G38650 566 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10020985 [exp] 411 / 1e-137 AT4G33840 634 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10014642 [exp] 401 / 1e-133 AT4G33840 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033786 [exp] 399 / 6e-133 AT4G33860 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033784 [exp] 377 / 4e-121 AT4G33820 480 / 2e-160 Glycosyl hydrolase superfamily protein (.1) Lus10014646 [exp] 270 / 2e-84 AT4G33820 336 / 6e-110 Glycosyl hydrolase superfamily protein (.1) Lus10007242 [exp] 269 / 9e-81 AT1G58370 1016 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10028242 [exp] 267 / 5e-80 AT1G58370 998 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10007243 [exp] 264 / 5e-77 AT1G58370 1291 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00331 [poplar] [flax] Glyco_hydro_10 Glycosyl hydrolase family 10
Representative CDS sequence Show only first row Show all	>Potri.004G173300.1 pacid=42793868 polypeptide=Potri.004G173300.1.p locus=Potri.004G173300 ID=Potri.004G173300.1.v4.1 annot-version=v4.1 ATGCAGTCCATGGCTTTTCTAAGCAAGAAGAGCATGCACAAGGCTCCTATCTTGGGCTTCTCAGTTTTCTTGATCCCCTTCTTGGCTTTTTCTTACGATG GACCTTTGTATGACTTCACAGCCTACACCGAGTGTAAATCAGTGCCAGAGAAGCCACTATATAATGGAGGGATATTCAAAGATCAAGCACCACTTACCCA GCACAGAATTAGTACTTCTTCAGATGGCTCTTATACACCAGCTTTGATATTGCAAAATCTAGCTCAAAACACCATGTATTGTTTTTCCATTTGGGTCAAG ATACAGGGTGCAGATTCAACTCTAGTAACTGCAAGCCTAATGGCAAATAATAATTCCACATATGATTGCGTGGGGACTGTTTTGGCCAAGAGTGGATGCT GGTCGTTTCTCAAGGGAGGATTCATTCTTGATTCACCTTCAAGTGTATCAATACTATATTTTCAGGGCACAACTGACAAAAGTATCAATGTCGCAATTGC AAGTGCTTCAGTACAGCCATTTACTGAGCAGCAATGGAGAACAAATCAGCAATACATAATTAACACTGAAAGAAAGCGTGCCGTGACAATACATGTGTCA GATAGTCATGGAGATAGGCTGCAAGGAGCATCCATTACAATAGAGCAAATCTCAAAAGATTTCCCATTTGGATCAGCAATAGCAAGAACAATTCTTGGAA ATTTACCCTATCAGAATTGGTTTGTTGAGAGATTCAATGCAGCAGTATTTGAAAATGAACTCAAGTGGTATGCGACAGAACCCGAACAAGGGAAGGTCAA TTACACCATACCAGATCAAATGTTGGAATTCGTTCTAGCCAACCAAATAGTTGCTAGAGGCCACAATATTTTCTGGGAAGACCCCAAGTACAATCCAGCT TGGGTTCGTGATCTCACAGGTCCTGACCTAAAATCAGCAGTCAACTTCCGGATTCAAAGCCTAATGAGCAAATACAAAGAAGAGTTTATACATTGGGATG TTAGCAATGAAATGCTACATTTTGATTTCTATGAAGAAAGGCTTGGTCCGGATGCCACTTTACATTTCTACAAGACAGCACACGAAGCAGACCCCTTAGC ATCATTGTTTTTGAATGAATTTAATGTGGTGGAGACTTGCACTGATGTGAGTACAACAGTAGATACCTACATTGATAAGATAAGAGAACTTGAACGCGGA GGATCATCAATGAATGGAATTGGCCTAGAGAGTCACTTTTCTAAGCCAAATCTTCCTCTAATGAGGGCTATTCTAGATAAATTGGCTACCCTTAAGCTTC CCATTTGGCTCACAGAAGTTGATATCAGCAATAAATTTGATAAAGAAACTCAGGCTATTTATCTAGAGCAGGTGTTAAGAGAAGGCTTCTCGCATCCTGC AGTGGATGGGATCATGCTTTGGACTGCAATCCATCCTAATGGGGGGTGCTACCAAATGTGCCTTACAGATTATAATCTTCAAAACCTCCCGGCCGGTGAT ACAGTTGACAAGCTCCTAAGAGAATGGGAAACCGGGGAAGGAAATGGCCGCACAGATGATCATGGATCATACAGCTTCTTTGGCTTCTTAGGTGAATACA AAATAATGGTGCAATATGGCAACAGAACTACAAATTCAACACTGTCACTCAGTCAAAGTGATGAAACGAAGCATTTTAACATTCAGTTGTGA
AA sequence Show only first row Show all	>Potri.004G173300.1 pacid=42793868 polypeptide=Potri.004G173300.1.p locus=Potri.004G173300 ID=Potri.004G173300.1.v4.1 annot-version=v4.1 MQSMAFLSKKSMHKAPILGFSVFLIPFLAFSYDGPLYDFTAYTECKSVPEKPLYNGGIFKDQAPLTQHRISTSSDGSYTPALILQNLAQNTMYCFSIWVK IQGADSTLVTASLMANNNSTYDCVGTVLAKSGCWSFLKGGFILDSPSSVSILYFQGTTDKSINVAIASASVQPFTEQQWRTNQQYIINTERKRAVTIHVS DSHGDRLQGASITIEQISKDFPFGSAIARTILGNLPYQNWFVERFNAAVFENELKWYATEPEQGKVNYTIPDQMLEFVLANQIVARGHNIFWEDPKYNPA WVRDLTGPDLKSAVNFRIQSLMSKYKEEFIHWDVSNEMLHFDFYEERLGPDATLHFYKTAHEADPLASLFLNEFNVVETCTDVSTTVDTYIDKIRELERG GSSMNGIGLESHFSKPNLPLMRAILDKLATLKLPIWLTEVDISNKFDKETQAIYLEQVLREGFSHPAVDGIMLWTAIHPNGGCYQMCLTDYNLQNLPAGD TVDKLLREWETGEGNGRTDDHGSYSFFGFLGEYKIMVQYGNRTTNSTLSLSQSDETKHFNIQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38650			Glycosyl hydrolase family 10 p...		Potri.004G173300 [exp]	0	1
AT2G47930		AGP26, ATAGP26	ARABIDOPSIS THALIANA ARABINOGA...		Potri.002G207500 [exp]	1.00	0.9174
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Potri.002G191100 [exp]	2.64	0.8670
AT1G69080			Adenine nucleotide alpha hydro...		Potri.008G109000 [exp]	2.82	0.9006
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.012G105500 [exp]	8.66	0.8799
AT3G06840			unknown protein		Potri.001G162100 [exp]	10.58	0.8879
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Potri.018G034100 [exp]	11.61	0.8639	Pt-CYC3.1
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.001G120300 [exp]	12.60	0.8966	SKU5.2
AT2G30890			Cytochrome b561/ferric reducta...		Potri.005G204300 [exp]	15.49	0.8708
AT2G34060			Peroxidase superfamily protein...		Potri.011G062300 [exp]	20.49	0.8459
AT2G45340			Leucine-rich repeat protein ki...		Potri.002G147000 [exp]	25.25	0.8520

Compare expression of checked genes

Potri.004G173300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.