Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34950 684 / 0 Major facilitator superfamily protein (.1) AT2G16660 655 / 0 Major facilitator superfamily protein (.1) AT1G80530 263 / 1e-80 Major facilitator superfamily protein (.1) AT2G28120 261 / 9e-80 Major facilitator superfamily protein (.1) AT1G74780 165 / 2e-44 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G39210 158 / 2e-41 Major facilitator superfamily protein (.1) AT2G34355 152 / 6e-40 Major facilitator superfamily protein (.1) AT1G18940 152 / 9e-40 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G34350 152 / 1e-39 Nodulin-like / Major Facilitator Superfamily protein (.1) AT3G01930 145 / 7e-38 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G132700 [exp] 847 / 0 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 610 / 0 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 243 / 5e-73 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 242 / 1e-72 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 173 / 6e-47 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 166 / 1e-44 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 158 / 1e-41 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.001G329100 [exp] 148 / 4e-38 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.008G032901 [exp] 146 / 3e-37 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025053 [exp] 671 / 0 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 662 / 0 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10017480 [exp] 258 / 9e-79 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10041962 [exp] 170 / 9e-46 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 167 / 5e-45 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 167 / 6e-45 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 165 / 4e-44 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10014640 [exp] 155 / 3e-40 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10042170 [exp] 150 / 3e-39 AT1G74780 566 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10033790 [exp] 149 / 2e-38 AT2G39210 734 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF06813 [poplar] [flax] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Potri.004G173400.1 pacid=42794621 polypeptide=Potri.004G173400.1.p locus=Potri.004G173400 ID=Potri.004G173400.1.v4.1 annot-version=v4.1 ATGGGTTTTCATCAAACCTCTTCAATTTCTTTCTCAGCTACAAAATGGCTAGGCTTTGTGACTGCTGTTTGGGTCCAAGCTATTTCAGGCAACAACTACA CCTTCTCAAACTACTCTGATGCACTTAAATCTCTAATGAACTTGACCCAACTTGAACTCAACAATTTATCTGTTGCTAAAGATGTTGGCAAGGCCTTTGG TTTGCTTGCTGGTCTTGCTTCTGATCGTTTGCCTACTCCTGTTATTCTTCTTATCGGTTCAATTGAAGGTCTTATCGGTTATGGTACTCAATGGCTTGTT GTTAGTGGGAGAATTCAACCTCTCCCTTATTGGCAGATGTGCATCTTCCTATGTCTAGGAGGAAACAGCACTACATGGATGAACACGGCGGTTTTAGTAA CCTGCATCCGCAACTTCCGCCGCAACCGTGGCCCTGTCTCTGGAATCTTGAAGGGCTATGTTGGTCTAAGCACGGCTATATTCACCGACCTATGTGCAGC TCTATTTGCTTATGACCCTGCAAAGTTTCTCATAATGCTTGCTGTCATCCCCTTTGCTGTCTGTCTCACCGCCATAGTTTTCCTCCGAGAAACCCCACCT GCCGCTACTATAGAGGAAGAAAAAGAAGAAAGCAAATACTTCAATATCTTCAACGCTGTTGCTGTTATTGTGGCTGTTTATTTAATGGCTTACGGTTTTA TTCCAAATCCTAGCCATGCTATTTCATTGGCGTTCTCGGTTATATTGCTGGTTCTTTTAGCTTCTCCATTAGCAGCTCCAGTTCATGCTTTTATTAAGAG CTGGACTTTGAACCGGTTCAAGAACCAAGCGGATGTTGAAAGGCAAATTCAAGAACCTTTATTGATAGAAGAGAAAGCCCAGGAGGAGATTCAAGAAAAG CCCGCTGAAGAGTCGGCTTCAGCAGTGGTGGAGCAACCGCAAGCTGTAGAGGAGGAGAAGGCAGCTGTGGAGGTAAAGAGGAGGCCGGTGATTGGAGAGG ATCATACAATTTTTGAGGCAATGCAGACCGTTGATTTTTGGGTTCTGTTTGTGTCTTTCCTTTGTGGGGTTGGCACAGGTTTGGCTGTGATGAACAATAT GGGACAGATTGGCTTGGCTCTCGGATATGCTGACGTTTCTCTTTTCATTTCCATGACAAGTATTTGGGGATTCTTCGGAAGGATTGTTTCTGGCTCGGTG TCTGAGTACTACATCAAGAAAGCTGGAATACCAAGGCCTCTTTGGAATGCAGCATCTCAGATTTTAATGGCTGTTGGCTACATCCTCATGGCTGTGGCTT TGCCTGGGTCGCTATACGTCGGTTCAATAGTCGTTGGTATCTGCTACGGAGTTCGTTTAGCTGTCACAGTCCCGACAGCCTCCGAACTATTTGGTCTCAA GTATTTTGGTCTGATTTACAACATCTTAATCCTCAATCTTCCTCTGGGCTCCTTCCTATTTTCTGGTCTGCTTGCTGGATTTTTATACGACGCAGAAGCT ACCCCAGCACCAGGAGGTGGCAATACTTGTGTTGGTGCCCATTGTTATAGACTTGTTTTCATTATCATGGCCATTGCATGTGTCATTGGGTTTGGTTTGG ATGTTCTTCTGGGAATCAGAACCAAGAAGATTTATAACAGGATCTACATGAGCAGAAGATCAAAGAAATTGGCTGCAGCATCCAATCTGCAATGA
AA sequence Show only first row Show all	>Potri.004G173400.1 pacid=42794621 polypeptide=Potri.004G173400.1.p locus=Potri.004G173400 ID=Potri.004G173400.1.v4.1 annot-version=v4.1 MGFHQTSSISFSATKWLGFVTAVWVQAISGNNYTFSNYSDALKSLMNLTQLELNNLSVAKDVGKAFGLLAGLASDRLPTPVILLIGSIEGLIGYGTQWLV VSGRIQPLPYWQMCIFLCLGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCAALFAYDPAKFLIMLAVIPFAVCLTAIVFLRETPP AATIEEEKEESKYFNIFNAVAVIVAVYLMAYGFIPNPSHAISLAFSVILLVLLASPLAAPVHAFIKSWTLNRFKNQADVERQIQEPLLIEEKAQEEIQEK PAEESASAVVEQPQAVEEEKAAVEVKRRPVIGEDHTIFEAMQTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYADVSLFISMTSIWGFFGRIVSGSV SEYYIKKAGIPRPLWNAASQILMAVGYILMAVALPGSLYVGSIVVGICYGVRLAVTVPTASELFGLKYFGLIYNILILNLPLGSFLFSGLLAGFLYDAEA TPAPGGGNTCVGAHCYRLVFIIMAIACVIGFGLDVLLGIRTKKIYNRIYMSRRSKKLAAASNLQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34950			Major facilitator superfamily ...		Potri.004G173400 [exp]	0	1
AT2G42040			unknown protein		Potri.016G058100 [exp]	4.00	0.8280
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Potri.013G059600 [exp]	9.38	0.8091
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.001G060100 [exp]	11.22	0.8257
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Potri.010G035900 [exp]	11.53	0.8305
AT2G38610			RNA-binding KH domain-containi...		Potri.013G159800 [exp]	13.85	0.8245
AT1G64760			O-Glycosyl hydrolases family 1...		Potri.013G059700 [exp]	17.32	0.8083
					Potri.010G144600 [exp]	23.10	0.8154
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Potri.010G199200 [exp]	24.73	0.8033
AT4G38660			Pathogenesis-related thaumatin...		Potri.005G112600 [exp]	25.45	0.8115
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G145200 [exp]	28.19	0.8220

Compare expression of checked genes

Potri.004G173400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.