Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34960 317 / 7e-111 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G29960 250 / 7e-85 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 236 / 2e-79 ROC7 rotamase CYP 7 (.1) AT3G55920 227 / 3e-75 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 212 / 3e-70 ROC1 rotamase CYP 1 (.1) AT2G21130 207 / 4e-68 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G56070 206 / 1e-67 ROC2 rotamase cyclophilin 2 (.1.2) AT5G13120 204 / 4e-66 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT2G16600 199 / 6e-65 ROC3 rotamase CYP 3 (.1.2) AT4G34870 198 / 1e-64 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G132800 [exp] 362 / 8e-129 AT4G34960 328 / 2e-115 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G046500 [exp] 245 / 1e-82 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.010G189000 [exp] 243 / 1e-81 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G251700 [exp] 241 / 5e-81 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.002G021500 [exp] 210 / 2e-69 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.009G130100 [exp] 209 / 3e-69 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G240200 [exp] 206 / 1e-67 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.004G168800 [exp] 205 / 1e-67 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.009G106200 [exp] 211 / 4e-67 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025052 [exp] 315 / 7e-109 AT4G34960 311 / 2e-107 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10018238 [exp] 247 / 2e-83 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 246 / 3e-83 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10014846 [exp] 245 / 1e-81 AT2G29960 310 / 6e-107 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10038315 [exp] 226 / 6e-75 AT2G29960 313 / 1e-109 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10030408 [exp] 228 / 1e-74 AT3G55920 333 / 5e-116 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10036180 [exp] 214 / 4e-70 AT2G29960 300 / 3e-104 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10012167 [exp] 209 / 6e-69 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10007579 [exp] 209 / 9e-69 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10023860 [exp] 208 / 4e-66 AT2G15790 599 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.004G173500.1 pacid=42795915 polypeptide=Potri.004G173500.1.p locus=Potri.004G173500 ID=Potri.004G173500.1.v4.1 annot-version=v4.1 ATGGTTAGAGATTGTCCAGCTTGGGTGGTTCAACCTAAGTGCCTCCTTCTCTTCTTTGTCCTGCTTATTTTTCTCATCTTTGCCTTTACCAGTCCTAAAC AGGATGAGGTGAAGGAAGAAGAACAGGAGTATGAGATAACTCATAGAGTATACTTGGATGTTGATATTGACGAGCAACGTCAGGGTAGAATTGTTATTGG ATTATATGGAAAGGTTGTATCAAAAACTGCAGAAAATTTCAGGGCTTTGTGCACAGGGGAAAAAGGTAAGGGTGCGAGTGGGAAGCCCCTCCATTATAAG GGAACACCTTTTCATCGGATAATATCTGGTTTCATGATTCAAGGCGGTGACATAGTTTACGGTGATGGGAGGGGAAGCGATTCTATATATGGAAGCATCT TTCCCGATGAGAATTTTAAGATAAAACATTCACATGCAGGAGTTGTTTCCATGGTGAATTCAGGACCAAATTCCAATGGCTCTCAGTTTTTCATCACCAC CATTAAGACTAGCTGGCTGGACGGAGAGCATGTTGTTTTTGGAAAGGTTATCCAAGGAATGGATACGGTTTATGCAATTGAAGGGGGAGCAGGAACTTAC AGTGGAAAACCCAGAAAAAAAGTAATTATTGCTGACTCAGGAGAGATACCTAAGGACAAGTGGGATGAGGAAACTTGA
AA sequence Show only first row Show all	>Potri.004G173500.1 pacid=42795915 polypeptide=Potri.004G173500.1.p locus=Potri.004G173500 ID=Potri.004G173500.1.v4.1 annot-version=v4.1 MVRDCPAWVVQPKCLLLFFVLLIFLIFAFTSPKQDEVKEEEQEYEITHRVYLDVDIDEQRQGRIVIGLYGKVVSKTAENFRALCTGEKGKGASGKPLHYK GTPFHRIISGFMIQGGDIVYGDGRGSDSIYGSIFPDENFKIKHSHAGVVSMVNSGPNSNGSQFFITTIKTSWLDGEHVVFGKVIQGMDTVYAIEGGAGTY SGKPRKKVIIADSGEIPKDKWDEET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34960			Cyclophilin-like peptidyl-prol...		Potri.004G173500 [exp]	0	1
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Potri.004G168800 [exp]	8.94	0.8683	VCCYP.1
AT1G32210		ATDAD1	DEFENDER AGAINST APOPTOTIC DEA...		Potri.003G096800 [exp]	9.89	0.8776	Pt-DAD1.1
AT4G38240		GNTI, CGL1	N-ACETYLGLUCOSAMINYLTRANSFERAS...		Potri.004G206900 [exp]	10.00	0.8434
AT5G50460			secE/sec61-gamma protein trans...		Potri.015G097300 [exp]	15.87	0.8533	SEC61.2
AT5G19050			alpha/beta-Hydrolases superfam...		Potri.008G202300 [exp]	16.91	0.8765
AT1G64800			DNA binding;sequence-specific ...		Potri.016G001800 [exp]	18.86	0.8702
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Potri.016G088200 [exp]	25.45	0.8728	SYP71.2
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Potri.001G165600 [exp]	27.20	0.8533	Pt-SEC22.1
AT5G56510		APUM12	pumilio 12 (.1)		Potri.002G120900 [exp]	27.92	0.8016
AT2G39960			Microsomal signal peptidase 25...		Potri.008G064700 [exp]	30.41	0.8400

Compare expression of checked genes

Potri.004G173500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.