Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38630 397 / 5e-137 ATMCB1, MBP1, AT-MCB1 ,RPN10 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G133000 [exp] 591 / 0 AT4G38630 436 / 3e-152 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1) Potri.007G056200 [exp] 437 / 1e-152 AT4G38630 397 / 6e-137 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025050 [exp] 471 / 6e-165 AT4G38630 509 / 4e-180 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1) Lus10034493 [exp] 464 / 2e-163 AT4G38630 512 / 0.0 MULTIUBIQUITIN-CHAIN-BINDING PROTEIN 1, MULTIUBIQUITIN CHAIN BINDING PROTEIN 1, regulatory particle non-ATPase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02809 [poplar] [flax] UIM Ubiquitin interaction motif CL0128 [poplar] [flax] vWA-like PF13519 [poplar] [flax] VWA_2 von Willebrand factor type A domain
Representative CDS sequence Show only first row Show all	>Potri.004G173700.1 pacid=42795512 polypeptide=Potri.004G173700.1.p locus=Potri.004G173700 ID=Potri.004G173700.1.v4.1 annot-version=v4.1 ATGGTTCTCGAGGCGACTATGATATGCGTCGACAACTCAGAATGGATGCGAAACGGCGATTACTCTCCTTCTCGTTTTCAAGCTCAAGCTGATGCTGTTA ATCTCTTATGCGGCGCTAAAACCCAATCGAATCCAGAGAATACAGTGGGGATATTAACAATGGCAGGCAAACAAGTTCGGGTTTTGACTACTCTTACTAG TGATCTTGGCAAGATTTTGTCTTGTATGCACGATCTAGAAGTGGGTGGTGAGATGAATCTATCAGCTGGAATTCAGGTTGCACAACTAGCTCTCAAGCAT CGTCAAAACAAAAATCAGCAGCAAAGAATAATAGTTTTTGCTGGAAGTCCTATCCAATATGATAAGAAGATGTTGGAGACCATAGGAAAGAAATTAAAAA AGAACAATGTATCTCTAGATATTGTTGATTTTGGAGAAGACAAGGAGGGGAAGCTGGAGAAGTTGGAGGCCCTCTTTGCTGCTGTCAATAGCAATGAGAG TAGCCATATAGTTCACATTCCTCCTGGTGGAGTTGCTATTTCTGATGCTCTTATGAGTACACCTGTATTCACTGGAGATGGGGAAGGAGGGAGTGGCTTT GCTGTGGCGGCTGCAGCAGCTGGTGGTGGCGACTTTGATTTTGGCGTAGATCCTAATTTAGATCCAGAGCTGGCTCTTGCCCTTAGAGTTTCTATGGAAG AGGAAAGAGCTAGGCAAGAAGCTGCTGCAAAAAGGGCTGCTGATGAAGCTGCTAGACAAGAAAAGGGAGAAGAACCACCATCCAATTCACAGGATGCAAC AATGGTTGACAAGGCTGCCGAAGCAACCAACAATGCTTCTGAACCAATGGATGAAGTGAATGCTCTACTTCAGCATGCAATTACTCTATCAATGGAGAAC TCTGGATCTGATCCCTCAGTTCGTGATTCTGAAATGGCGGAGGCAACCAATGAAGATCAGGATCTGGCAGTGGCTCTTCAGATCTCCATTCAGGAAACTG CAAAAGATTCATCAAGTCAGTCAGATATGAGCAAGGCTCTGGAGGATCAGTCTTTTATGTCATCTGTCGTTGCATCACTTCCAGGAGTTGACCCTAACGA TCCCTCAGTGAAGGAACTGCTAGCATCTTTGCAAGGCCAATCTGAGCAGTCTGAACAGAAGAAGAATGAAGATAATCCACCAAGTGATGGCAAGTGA
AA sequence Show only first row Show all	>Potri.004G173700.1 pacid=42795512 polypeptide=Potri.004G173700.1.p locus=Potri.004G173700 ID=Potri.004G173700.1.v4.1 annot-version=v4.1 MVLEATMICVDNSEWMRNGDYSPSRFQAQADAVNLLCGAKTQSNPENTVGILTMAGKQVRVLTTLTSDLGKILSCMHDLEVGGEMNLSAGIQVAQLALKH RQNKNQQQRIIVFAGSPIQYDKKMLETIGKKLKKNNVSLDIVDFGEDKEGKLEKLEALFAAVNSNESSHIVHIPPGGVAISDALMSTPVFTGDGEGGSGF AVAAAAAGGGDFDFGVDPNLDPELALALRVSMEEERARQEAAAKRAADEAARQEKGEEPPSNSQDATMVDKAAEATNNASEPMDEVNALLQHAITLSMEN SGSDPSVRDSEMAEATNEDQDLAVALQISIQETAKDSSSQSDMSKALEDQSFMSSVVASLPGVDPNDPSVKELLASLQGQSEQSEQKKNEDNPPSDGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Potri.004G173700 [exp]	0	1
AT1G05350			NAD(P)-binding Rossmann-fold s...		Potri.015G096300 [exp]	2.00	0.8012
AT1G02410			cytochrome c oxidase assembly ...		Potri.001G078500 [exp]	9.64	0.7010
AT3G22110		PAC1	20S proteasome alpha subunit C...		Potri.006G008800 [exp]	15.36	0.7612	Pt-PAC1.1
AT2G44100		AT-GDI1, ATGDI1	guanosine nucleotide diphospha...		Potri.017G001200 [exp]	15.96	0.7550	Pt-GDI.1
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Potri.009G133000 [exp]	18.73	0.7297
AT2G26590		RPN13	regulatory particle non-ATPase...		Potri.006G078800 [exp]	27.49	0.7038
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.005G157700 [exp]	29.29	0.6894	VF14.2
AT1G80500			SNARE-like superfamily protein...		Potri.001G043400 [exp]	34.32	0.7151
AT1G28120			unknown protein		Potri.003G162600 [exp]	38.24	0.6629
AT1G23750			Nucleic acid-binding, OB-fold-...		Potri.008G189900 [exp]	45.69	0.7086

Compare expression of checked genes

Potri.004G173700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.