Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ERD7.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17840 471 / 1e-164 ERD7 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) AT4G35985 446 / 7e-155 Senescence/dehydration-associated protein-related (.1) AT3G51250 432 / 4e-149 Senescence/dehydration-associated protein-related (.1) AT4G15450 208 / 7e-63 Senescence/dehydration-associated protein-related (.1) AT3G21600 190 / 3e-56 Senescence/dehydration-associated protein-related (.1.2) AT3G21590 69 / 2e-13 Senescence/dehydration-associated protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G133500 [exp] 583 / 0 AT2G17840 449 / 1e-156 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.005G111600 [exp] 478 / 6e-167 AT2G17840 491 / 3e-172 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.018G087500 [exp] 212 / 3e-64 AT4G15450 401 / 5e-139 Senescence/dehydration-associated protein-related (.1) Potri.006G164748 [exp] 183 / 1e-53 AT4G15450 332 / 3e-112 Senescence/dehydration-associated protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027840 [exp] 531 / 0 AT2G17840 489 / 4e-169 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10005067 [exp] 480 / 3e-168 AT2G17840 459 / 5e-160 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10014132 [exp] 478 / 2e-167 AT2G17840 476 / 1e-166 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10028439 [exp] 433 / 2e-149 AT3G51250 520 / 0.0 Senescence/dehydration-associated protein-related (.1) Lus10034499 [exp] 318 / 1e-107 AT2G17840 306 / 2e-103 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10041892 [exp] 295 / 3e-97 AT3G51250 358 / 9e-122 Senescence/dehydration-associated protein-related (.1) Lus10043028 [exp] 198 / 3e-59 AT4G15450 373 / 3e-128 Senescence/dehydration-associated protein-related (.1) Lus10011127 [exp] 193 / 3e-57 AT4G15450 382 / 8e-132 Senescence/dehydration-associated protein-related (.1) Lus10012957 [exp] 178 / 6e-52 AT4G15450 321 / 1e-108 Senescence/dehydration-associated protein-related (.1) Lus10034498 [exp] 108 / 5e-28 AT3G51250 97 / 9e-25 Senescence/dehydration-associated protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06911 [poplar] [flax] Senescence Senescence-associated protein
Representative CDS sequence Show only first row Show all	>Potri.004G174100.1 pacid=42794361 polypeptide=Potri.004G174100.1.p locus=Potri.004G174100 ID=Potri.004G174100.1.v4.1 annot-version=v4.1 ATGTCATCTCCAAAACGCAACTCTCTTTACCCACAAGTTATTCTCTCAAACCCAGAAGCCATTTCTGCCACTTCTTCTACTCCATCCTCTTTGTATCCTA CTACTGGCATGAAAGACTTGGCAGAGAATCTCTTCCCTGAAGACGACAACAACAACGACTTAGGTTCGCCGCTGGGCTCAAACTCTGAACCCCATGAAGA AGTCCTGATCAAGATTTCAGGATCAATAGTTCATTTGATTGAGAGAGATCATAGCGTGGAACTGGCTTGTGGGGATTTCTTTATAGTGAGTCTTAAACAA GGTGACACTATTGTTGCTGTTTTTGCTCGTGTAGGTGATGATATTCAGTGGCCTCTGGCTAATGATGAGGCAGCAGTAAAGCTTGATGGATCACATTACT TTTTCACTCTTTGGGTGCCTGGAAATGAATCAGGTAGGGGCGAGTTAAATAAGGGAGAAGTTGAGTTGTTGAATTATGGGGTTACTTTTGCTTCGAAAGG ACAAGAGGGTTTGTTGAAGGAGTTAGATAAGATATTGGAATGTTATAGTTCGTTTTCGGTGCAAGAAGTGAATGAGAGTGGAGGGAAGTGGGAGGTACTT GATGGGAGCGTAGCGGAGAAGATATCCCCGGATGAGTTAGAGAAGAAGAAAGAATTGACGGAGAAGAGTTCTGCCGCGTATTGGACAGTGTTGGCTCCTA ATGTGGAGGATTATAGCTCAAGTATTGCTAGGTTGATTGCGGCGGGGTCAGGGCAGTTGATCAAGGGAATTTTCTGGTGTGGAGATGTGACTGTGGATAG GTTGAAGTGGGGTAATGAGTTCTTCAAGATAAGGATTGATAAGAGTTCGGATTCAGATATCAGTCCAGGGACTTTGAGGAGGATCAAAAGGGTTAAGAAG TTGACGAAAATGTCAGAGGGAGTGGCTCTTGGAATTCTTACTGGGGTTGTGAAAGTCTCTGGATTCTTTACGAGTCCAATTGTGAACTCTAAAGTGGGCA AGAAATTTTTTAGCCTAATGCCAGGAGAAATTGTTCTGGCTTCCTTGGATGGATTTAACAAGGTGTGTGATGCTGTTGAAGTTGCTGGAAAGAATGTCAT GTCAACCTCGTCAATTGTGACAACTGGACTTGTCTCACACCGATATGGAGAAGAAGCAGGGAAGGCAACAAATGAAGGGTTTGATGCTGCTGGTCATGCT ATTGGCACTGCCTGGGCTGTCTTCAAGATAAGAAAGGCTCTTAACCCAAAGAGTGTCTTCAAACCAACAACTCTTGTAAAAGCTGCTGCACGGGCAAATT CTACTGAAATGAAGCCTAAAAATATACCAATTAAAGACTGA
AA sequence Show only first row Show all	>Potri.004G174100.1 pacid=42794361 polypeptide=Potri.004G174100.1.p locus=Potri.004G174100 ID=Potri.004G174100.1.v4.1 annot-version=v4.1 MSSPKRNSLYPQVILSNPEAISATSSTPSSLYPTTGMKDLAENLFPEDDNNNDLGSPLGSNSEPHEEVLIKISGSIVHLIERDHSVELACGDFFIVSLKQ GDTIVAVFARVGDDIQWPLANDEAAVKLDGSHYFFTLWVPGNESGRGELNKGEVELLNYGVTFASKGQEGLLKELDKILECYSSFSVQEVNESGGKWEVL DGSVAEKISPDELEKKKELTEKSSAAYWTVLAPNVEDYSSSIARLIAAGSGQLIKGIFWCGDVTVDRLKWGNEFFKIRIDKSSDSDISPGTLRRIKRVKK LTKMSEGVALGILTGVVKVSGFFTSPIVNSKVGKKFFSLMPGEIVLASLDGFNKVCDAVEVAGKNVMSTSSIVTTGLVSHRYGEEAGKATNEGFDAAGHA IGTAWAVFKIRKALNPKSVFKPTTLVKAAARANSTEMKPKNIPIKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Potri.004G174100 [exp]	0	1	Pt-ERD7.1
AT2G43850			Integrin-linked protein kinase...		Potri.007G142100 [exp]	1.73	0.7181
AT3G05880		RCI2A	RARE-COLD-INDUCIBLE 2A, Low te...		Potri.005G002100 [exp]	2.00	0.6929
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Potri.002G049800 [exp]	4.47	0.6623	HMT1,SMTA.1
AT3G51750			unknown protein		Potri.016G124000 [exp]	10.95	0.6749
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Potri.018G139800 [exp]	14.69	0.6395	Pt-ACA8.6
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.007G139400 [exp]	15.65	0.6293
					Potri.006G183466 [exp]	16.73	0.6293
AT3G62930			Thioredoxin superfamily protei...		Potri.002G208700 [exp]	17.29	0.6083	PtrGrx20
AT1G10020			Protein of unknown function (D...		Potri.001G288900 [exp]	17.88	0.5979
AT2G37870			Bifunctional inhibitor/lipid-t...		Potri.008G141000 [exp]	19.74	0.6285

Compare expression of checked genes

Potri.004G174100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.