Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PAD1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66140 406 / 3e-145 PAD2 proteasome alpha subunit D2 (.1) AT3G51260 406 / 3e-145 PAD1 20S proteasome alpha subunit PAD1 (.1.2) AT3G22110 174 / 7e-54 PAC1 20S proteasome alpha subunit C1 (.1) AT1G16470 160 / 7e-49 PAB1 proteasome subunit PAB1 (.1.2) AT1G79210 160 / 1e-48 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT1G53850 155 / 7e-47 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) AT3G14290 155 / 2e-46 PAE2 20S proteasome alpha subunit E2 (.1) AT5G35590 147 / 3e-43 PAA1 proteasome alpha subunit A1 (.1) AT2G05840 142 / 5e-42 PAA2 20S proteasome subunit PAA2 (.1.2) AT1G47250 127 / 3e-35 PAF2 20S proteasome alpha subunit F2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G133800 [exp] 445 / 8e-161 AT5G66140 409 / 2e-146 proteasome alpha subunit D2 (.1) Potri.006G008800 [exp] 176 / 1e-54 AT3G22110 452 / 1e-163 20S proteasome alpha subunit C1 (.1) Potri.016G015400 [exp] 174 / 8e-54 AT3G22110 445 / 1e-160 20S proteasome alpha subunit C1 (.1) Potri.012G123550 [exp] 168 / 1e-51 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.015G122400 [exp] 168 / 1e-51 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.001G162900 [exp] 155 / 1e-46 AT3G14290 471 / 4e-171 20S proteasome alpha subunit E2 (.1) Potri.003G072500 [exp] 146 / 4e-43 AT3G14290 464 / 1e-168 20S proteasome alpha subunit E2 (.1) Potri.006G110800 [exp] 143 / 7e-42 AT2G05840 453 / 7e-164 20S proteasome subunit PAA2 (.1.2) Potri.016G139600 [exp] 143 / 8e-42 AT2G05840 459 / 2e-166 20S proteasome subunit PAA2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041890 [exp] 415 / 1e-148 AT5G66140 442 / 9e-160 proteasome alpha subunit D2 (.1) Lus10028437 [exp] 389 / 2e-138 AT5G66140 417 / 8e-150 proteasome alpha subunit D2 (.1) Lus10042145 [exp] 172 / 4e-53 AT3G22110 474 / 3e-172 20S proteasome alpha subunit C1 (.1) Lus10004235 [exp] 167 / 6e-52 AT3G22110 375 / 2e-134 20S proteasome alpha subunit C1 (.1) Lus10017135 [exp] 165 / 2e-50 AT1G16470 454 / 1e-164 proteasome subunit PAB1 (.1.2) Lus10036210 [exp] 164 / 3e-50 AT1G16470 450 / 3e-163 proteasome subunit PAB1 (.1.2) Lus10018318 [exp] 163 / 7e-46 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027669 [exp] 143 / 9e-42 AT2G05840 473 / 1e-171 20S proteasome subunit PAA2 (.1.2) Lus10037454 [exp] 149 / 2e-41 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10003936 [exp] 149 / 3e-41 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [poplar] [flax] NTN PF00227 [poplar] [flax] Proteasome Proteasome subunit CL0052 [poplar] [flax] NTN PF10584 [poplar] [flax] Proteasome_A_N Proteasome subunit A N-terminal signature
Representative CDS sequence Show only first row Show all	>Potri.004G174200.1 pacid=42795156 polypeptide=Potri.004G174200.1.p locus=Potri.004G174200 ID=Potri.004G174200.1.v4.1 annot-version=v4.1 ATGGCTCGATACGATCGTGCAATCACAGTATTTTCTCCTGATGGCCATTTATTTCAAGTAGAATATGCTCTCGAAGCTGTCCGTAAAGGAAACGCTGCCG TTGGTGTCCGTGGCACTGATATTGTCGTTCTCGGTGTTGAAAAGAAATCCACCGCTAAACTTCAAGATTCTAGATCAGTGAAGAAGATTGTATCTTTGGA CGATCATGTGGCACTAGTATGTGCTGGATTGAAGGCAGATGCCCGTGTCTTGGTTAACAAGGCACGGATTGAGTGCCAAAGCTATAGGCTAACTGTTGAG GATCCTGTAACTGTTGAATATATAACGCGTTATATTGCTGGTTTGCAACAGAAATATACACAGAGTGGTGGTGTGAGGCCATTTGGTCTTTCGACCTTGA TTGTTGGCTTTGACCCACACTTGGGTGTCCCCGCTCTTTATCAAACTGATCCTTCTGGAGCTTTTTCAGCATGGAAAGCTAATGCTACCGGGAGAAACTC AAACTCAATGCGGGAGTTTTTGGAGAAAAACTATAAGGAAACTTCTGGGCAAGGAACTGTGAAGTTAGCTATCCGTGCTTTACTTGAAGTTGTTGAGAGT GGGGGGAAGAACATAGAAATTGCTGTGATGACAAAAGACCAGGGGCTGCGGCAGCTTGAAGAAGCTGAGATTGATGCAATTGTTGCTGAGATCGAAGCAG AGAAAGCAGCGGCTGAGGCTGCAAAGAAAGCTCCACTGAAAGATTCCTAG
AA sequence Show only first row Show all	>Potri.004G174200.1 pacid=42795156 polypeptide=Potri.004G174200.1.p locus=Potri.004G174200 ID=Potri.004G174200.1.v4.1 annot-version=v4.1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSTAKLQDSRSVKKIVSLDDHVALVCAGLKADARVLVNKARIECQSYRLTVE DPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPHLGVPALYQTDPSGAFSAWKANATGRNSNSMREFLEKNYKETSGQGTVKLAIRALLEVVES GGKNIEIAVMTKDQGLRQLEEAEIDAIVAEIEAEKAAAEAAKKAPLKDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51260		PAD1	20S proteasome alpha subunit ...		Potri.004G174200 [exp]	0	1	Pt-PAD1.2
AT3G26340			N-terminal nucleophile aminohy...		Potri.010G058100 [exp]	1.41	0.8835	PBE1.1
AT3G03100			NADH:ubiquinone oxidoreductase...		Potri.019G051400 [exp]	2.44	0.8790
AT1G56450		PBG1	20S proteasome beta subunit G1...		Potri.018G037700 [exp]	6.00	0.8456	Pt-PBG1.1
AT1G67250			Proteasome maturation factor U...		Potri.017G111900 [exp]	7.34	0.8526
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.006G216600 [exp]	7.48	0.8532	RPT1.5
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Potri.005G054500 [exp]	7.48	0.7836
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Potri.004G066000 [exp]	8.12	0.8380	Pt-PBB1.2
AT1G26750			unknown protein		Potri.010G165500 [exp]	8.48	0.8279
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Potri.001G469300 [exp]	8.83	0.8365
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Potri.002G148300 [exp]	9.05	0.7988	Pt-PBF1.1

Compare expression of checked genes

Potri.004G174200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.