Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	BGAL11.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16730 1116 / 0 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) AT4G35010 1115 / 0 BGAL11 beta-galactosidase 11 (.1) AT4G38590 1023 / 0 BGAL14 beta-galactosidase 14 (.1.2) AT1G77410 816 / 0 BGAL16 beta-galactosidase 16 (.1) AT3G13750 736 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G28470 733 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT5G63800 730 / 0 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) AT4G36360 718 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT2G32810 677 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT4G26140 647 / 0 BGAL12 beta-galactosidase 12 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G134400 [exp] 1527 / 0 AT2G16730 1098 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.002G080700 [exp] 843 / 0 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1) Potri.013G105100 [exp] 842 / 0 AT1G77410 1053 / 0.0 beta-galactosidase 16 (.1) Potri.005G180600 [exp] 817 / 0 AT1G77410 1051 / 0.0 beta-galactosidase 16 (.1) Potri.005G069200 [exp] 735 / 0 AT5G63800 962 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Potri.006G144500 [exp] 732 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.003G038500 [exp] 729 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G018100 [exp] 729 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.005G232600 [exp] 727 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019784 [exp] 1276 / 0 AT2G16730 1052 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10005071 [exp] 1244 / 0 AT2G16730 1050 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10027844 [exp] 1240 / 0 AT2G16730 1041 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10014126 [exp] 1150 / 0 AT2G16730 993 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10027843 [exp] 1079 / 0 AT2G16730 949 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10014125 [exp] 1055 / 0 AT4G38590 897 / 0.0 beta-galactosidase 14 (.1.2) Lus10005070 [exp] 872 / 0 AT4G38590 781 / 0.0 beta-galactosidase 14 (.1.2) Lus10033427 [exp] 787 / 0 AT1G77410 1016 / 0.0 beta-galactosidase 16 (.1) Lus10028538 [exp] 786 / 0 AT1G77410 967 / 0.0 beta-galactosidase 16 (.1) Lus10018138 [exp] 771 / 0 AT1G77410 928 / 0.0 beta-galactosidase 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01301 [poplar] [flax] Glyco_hydro_35 Glycosyl hydrolases family 35 CL0058 [poplar] [flax] PF02140 [poplar] [flax] Gal_Lectin Galactose binding lectin domain
Representative CDS sequence Show only first row Show all	>Potri.004G174800.1 pacid=42793755 polypeptide=Potri.004G174800.1.p locus=Potri.004G174800 ID=Potri.004G174800.1.v4.1 annot-version=v4.1 ATGGCGGTAAAATGCCATGTTCTTTTGATTGCTTCACTTCTTTCCTTGCTGCTTACGTCGGTCATTGCTCATGGAGATAAAAAAAAGGGTGTGACTTATG ATGGGAGGTCCTTGATCATCAATGGCAAAAGAGAGCTTCTCTTCTCTGGCTCCATTCACTATCCTCGCAGTACTCCTGAAATGTGGCCAGAACTAATCCA GAAGGCTAAGCGTGGAGGTTTGAATGTAATCCAAACTTACGTCTTTTGGAATATTCACGAGCCTGAGCAGGGCAAGTTTAATTTTGAAGGATCATATGAC CTGGTGAAGTTCATCAAGACGATTGGGGAGAATGGTATGTCTGCAACCATCAGGCTTGGACCATTCATCCAGGCTGAATGGAACCATGGAGGGCTCCCAT ATTGGTTGAGAGAGATTCCAGACATCATATTCCGTTCAGACAACGCACCCTTCAAGCTTCATATGGAGAGATTCGTTACAATGATCATCAACAAGTTGAA AGAAGAGAAATTGTTTGCATCACAAGGAGGTCCCATCATCTTGGCTCAGATTGAAAATGAGTACAACACTGTCCAACTTGCATATAGAAACTTGGGAGTT AGCTATGTTCAGTGGGCAGGAAATATGGCTCTGGGGCTGAAAACAGGAGTCCCATGGGTCATGTGCAAGCAGAAGGATGCTCCTGGTCCAGTGATCAATA CGTGCAATGGAAGGCACTGCGGAGATACCTTCACAGGCCCCAATAGTCCTGATAAACCATCTCTATGGACTGAGAACTGGACTGCTCAATTTAGAGTTTT TGGAGATCCCCCATCTCAAAGATCAGCAGAAGATACTGCATTTTCAGTTGCTCGTTGGTTTTCAAAGAATGGTAGTCTGGTCAACTACTACATGTACCAT GGTGGGACAAACTTTGATAGAACTGCTGCCTCATTTGTAACAACCCGCTACTATGATGAAGCTCCTCTTGATGAATATGGTTTGCAGAGGGAACCAAAAT GGGGTCACCTCAAGGACCTTCATAGGGCTCTAAATCTATGCAAGAAGGCTCTTCTATGGGGAACCCCTAATGTTCAAAGGTTATCTGCTGATGTAGAGGC TCGGTTCTTTGAGCAACCTAGAACCAACGATTGCGCCGCTTTCTTGGCCAACAACAACACGAAAGATCCAGAAACTGTTACATTCAGGGGTAAGAAGTAT TACCTTCCAGCCAAATCCATCAGCATCCTCCCAGATTGCAAGACTGTCGTTTATAATACCATGACGGTTGTGTCACAACATAATTCAAGAAACTTTGTGA AATCAAGAAAAACAGACGGAAAACTTGAATGGAAGATGTTTTCAGAAACCATTCCATCTAACCTTCTAGTAGATTCCAGGATCCCAAGAGAACTTTATAA CTTAACTAAAGATAAAACCGACTACGCTTGGTTCACCACGACCATAAATGTGGATCGTAATGACCTGTCAGCACGAAAAGATATCAATCCAGTTTTAAGA GTTGCAAGTCTTGGCCATGCAATGGTTGCTTTTATAAATGGGGAATTTATAGGTTCTGCACATGGGAGCCAAATTGAGAAGAGCTTTGTCCTCCAGCATT CTGTGAAGTTGAAGCCTGGGATTAATTTTGTTACACTCTTGGGCTCTCTAGTTGGACTCCCAGATAGCGGAGCCTACATGGAGCATAGGTACGCTGGACC TCGCGGTGTCTCAATCCTAGGTTTGAACACTGGAACACTTGATCTGTCATCCAATGGTTGGGGACATCAGGTTGCCTTGTCGGGAGAGACAGCAAAAGTG TTCACAAAGGAAGGGGGGAGGAAGGTAACATGGACCAAAGTCAATAAGGACGGACCTCCTGTTACTTGGTACAAGACTCGCTTTGATGCTCCTGAAGGAA AATCCCCTGTTGCTGTCCGGATGACCGGTATGAAGAAGGGTATGATTTGGATCAATGGCAAGAGCATCGGTCGTTACTGGATGAATTACATCTCCCCTCT TGGAGAGCCTACTCAATCAGAATATCACATCCCAAGATCTTACTTAAAACCAACAAACAACCTTATGGTTATATTGGAGGAGGAGGGAGCAAGCCCTGAG AAGATTGAGATCCTAACTGTCAATAGAGATACCATCTGTAGCTACGTGACTGAATATCATCCACCAAATGTGAGATCCTGGGAAAGGAAGAATAAAAAAT TCACACCTGTTGCGGATGATGCAAAACCAGCAGCTCGCTTAAAGTGTCCAAACAAGAAGAAGATTGTTGCGGTGCAGTTTGCAAGCTTTGGTGATCCTTC GGGTACCTGTGGAAACTTTGCTGTTGGAACTTGTGATTCACCTATTTCCAAGCAAGTTGTTGAGCAGCATTGCTTGGGAAAAACTAGCTGTGATATTCCA ATGGACAAAGGGCTTTTTAACGGAAAGAAAGACAACTGTCCAAATTTGACCAAGAATCTGGCCGTTCAAGTGAAGTGCAGCAACAAGGGTCCCAAGCGTT CTGCAAACCAGGCTTAA
AA sequence Show only first row Show all	>Potri.004G174800.1 pacid=42793755 polypeptide=Potri.004G174800.1.p locus=Potri.004G174800 ID=Potri.004G174800.1.v4.1 annot-version=v4.1 MAVKCHVLLIASLLSLLLTSVIAHGDKKKGVTYDGRSLIINGKRELLFSGSIHYPRSTPEMWPELIQKAKRGGLNVIQTYVFWNIHEPEQGKFNFEGSYD LVKFIKTIGENGMSATIRLGPFIQAEWNHGGLPYWLREIPDIIFRSDNAPFKLHMERFVTMIINKLKEEKLFASQGGPIILAQIENEYNTVQLAYRNLGV SYVQWAGNMALGLKTGVPWVMCKQKDAPGPVINTCNGRHCGDTFTGPNSPDKPSLWTENWTAQFRVFGDPPSQRSAEDTAFSVARWFSKNGSLVNYYMYH GGTNFDRTAASFVTTRYYDEAPLDEYGLQREPKWGHLKDLHRALNLCKKALLWGTPNVQRLSADVEARFFEQPRTNDCAAFLANNNTKDPETVTFRGKKY YLPAKSISILPDCKTVVYNTMTVVSQHNSRNFVKSRKTDGKLEWKMFSETIPSNLLVDSRIPRELYNLTKDKTDYAWFTTTINVDRNDLSARKDINPVLR VASLGHAMVAFINGEFIGSAHGSQIEKSFVLQHSVKLKPGINFVTLLGSLVGLPDSGAYMEHRYAGPRGVSILGLNTGTLDLSSNGWGHQVALSGETAKV FTKEGGRKVTWTKVNKDGPPVTWYKTRFDAPEGKSPVAVRMTGMKKGMIWINGKSIGRYWMNYISPLGEPTQSEYHIPRSYLKPTNNLMVILEEEGASPE KIEILTVNRDTICSYVTEYHPPNVRSWERKNKKFTPVADDAKPAARLKCPNKKKIVAVQFASFGDPSGTCGNFAVGTCDSPISKQVVEQHCLGKTSCDIP MDKGLFNGKKDNCPNLTKNLAVQVKCSNKGPKRSANQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Potri.004G174800 [exp]	0	1	BGAL11.1
AT4G21700			Protein of unknown function (D...		Potri.011G052500 [exp]	11.74	0.8178
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Potri.008G037200 [exp]	11.74	0.8947
					Potri.010G148450 [exp]	18.60	0.7895
AT5G03250			Phototropic-responsive NPH3 fa...		Potri.008G038600 [exp]	22.58	0.7906
					Potri.006G034450 [exp]	25.21	0.8866
					Potri.013G018050 [exp]	35.39	0.8829
AT3G43220			Phosphoinositide phosphatase f...		Potri.018G063700 [exp]	52.24	0.7152
					Potri.006G062050 [exp]	61.13	0.8826
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.019G059200 [exp]	62.44	0.7015
AT1G06280	AS2	LBD2	LOB domain-containing protein ...		Potri.013G123900 [exp]	69.32	0.8826

Compare expression of checked genes

Potri.004G174800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.