Plant FIBer expression Database

Potri.004G175200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35040 266 / 8e-90 bZIP bZIP19 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
AT2G16770 257 / 3e-86 bZIP bZIP23 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
AT3G51960 115 / 3e-31 bZIP ATBZIP24 basic leucine zipper 24 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G134900
[exp]
394 / 8e-140 AT4G35040 291 / 2e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Potri.003G204400
[exp]
105 / 3e-27 AT2G16770 151 / 5e-45 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Potri.001G020200
[exp]
95 / 6e-23 AT2G16770 120 / 9e-33 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027847
[exp]
278 / 7e-94 AT2G16770 295 / 1e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Lus10005073
[exp]
271 / 1e-90 AT4G35040 294 / 2e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Lus10014121
[exp]
239 / 2e-79 AT2G16770 265 / 8e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Lus10019788
[exp]
214 / 1e-69 AT2G16770 209 / 5e-68 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Lus10016368
[exp]
104 / 1e-27 AT4G35040 135 / 5e-40 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0018 bZIP PF07716 bZIP_2 Basic region leucine zipper
Representative CDS sequence
>Potri.004G175200.4 pacid=42795670 polypeptide=Potri.004G175200.4.p locus=Potri.004G175200 ID=Potri.004G175200.4.v4.1 annot-version=v4.1
ATGGACGATGGGGAGTTAGATTTCTCAAACCAAGATTTGTTATCTAGTCCAAATATCGGTGAGATTCCAAGCAGTTGTTCTTTTGATTTCTTGGATGAGC
TACTGAAGGACACCCATGCTTGTACCCATACACACACATGCAATCCTCCTGGCCCTGACTATTCTCACACACACACTTGCTATCATGTGCATACAAAAAT
TTTGCCCCCTGCCGAGGACAAGGTTGTAAGTGATGATACTGCGGAGTCCACGGATAAAAAATCAAAGAAACGATCGTCAGGCAATAGGGAGGCTGTCCGA
AAGTATAGGGAGAGGAAGAAGGCAAAGGCTGCATCTTTGGAGGATGAAGTTAAGCATTTGCGAGCTTTGAACCAGCAGTTACTGAAGAGGCTGCAAGGAC
AGGCTGCATTGGAGGCAGAGGTTGCAAGACTCAAGTGTTTACTTGTGGACATTAGGGGGAGGATTGAAGGGGAAATTGGATCATTTCCATATCAGAAATC
AGCCAATAATGTGAATTTGGCCAATCCAAATATTCCTGGTTCTCTTGTGATGAATCCATGCAACATACAGTGTGATGGCCAGATTTATTGTCAGCGTCCG
GTGCTGGATAGCAAAGGTGGAGAAGGTGCACCATTGAATGGGCAAGGGTTTAGCAGTTGTGAGATTGAGAATCTTCAGTGTATGGAGTATCAGAATTCAG
GAATGATAGGCTTATCTGGGTGTAGCCTTGGGAATGAAGCAACAAATGGCAATTCTTCCAGTACAAATAAGAGAAAGAAGGGGATCGTGGAGCAAGTTTA
A
AA sequence
>Potri.004G175200.4 pacid=42795670 polypeptide=Potri.004G175200.4.p locus=Potri.004G175200 ID=Potri.004G175200.4.v4.1 annot-version=v4.1
MDDGELDFSNQDLLSSPNIGEIPSSCSFDFLDELLKDTHACTHTHTCNPPGPDYSHTHTCYHVHTKILPPAEDKVVSDDTAESTDKKSKKRSSGNREAVR
KYRERKKAKAASLEDEVKHLRALNQQLLKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQKSANNVNLANPNIPGSLVMNPCNIQCDGQIYCQRP
VLDSKGGEGAPLNGQGFSSCEIENLQCMEYQNSGMIGLSGCSLGNEATNGNSSSTNKRKKGIVEQV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G35040 bZIP bZIP19 Basic-leucine zipper (bZIP) tr... Potri.004G175200
[exp]
0 1
AT5G46030 unknown protein Potri.011G097300
[exp]
1.00 0.9279
AT1G05000 AtPFA-DSP1 plant and fungi atypical dual-... Potri.004G002800
[exp]
2.44 0.8885
AT5G24690 Protein of unknown function (D... Potri.001G210500
[exp]
6.70 0.8684
AT4G09830 Uncharacterised conserved prot... Potri.005G196400
[exp]
6.92 0.8551
AT4G14430 PEC12, IBR10, E... DELTA\(3\), DELTA\(2\)-ENOYL C... Potri.008G164900
[exp]
8.48 0.8695
AT3G05700 Drought-responsive family prot... Potri.013G011200
[exp]
8.77 0.8598
AT4G14850 MEF11, LOI1 lovastatin insensitive 1, Pent... Potri.008G153700
[exp]
9.48 0.8572
AT3G25470 bacterial hemolysin-related (.... Potri.014G175500
[exp]
14.56 0.8887
AT1G31335 unknown protein Potri.006G127000
[exp]
15.96 0.8529
AT1G07830 ribosomal protein L29 family p... Potri.002G185800
[exp]
18.97 0.8301

Potri.004G175200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.