Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68000 358 / 5e-127 ATPIS1 phosphatidylinositol synthase 1 (.1) AT4G38570 340 / 1e-119 PIS2 probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 (.1.2) AT3G55030 42 / 0.0002 PGPS2 phosphatidylglycerolphosphate synthase 2 (.1) AT2G39290 41 / 0.0005 PGP1, PGS1, PGPS1 phosphatidylglycerolphosphate synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G135500 [exp] 420 / 2e-151 AT1G68000 340 / 6e-120 phosphatidylinositol synthase 1 (.1) Potri.010G214900 [exp] 45 / 1e-05 AT3G55030 312 / 1e-108 phosphatidylglycerolphosphate synthase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019791 [exp] 402 / 5e-144 AT1G68000 354 / 1e-125 phosphatidylinositol synthase 1 (.1) Lus10014117 [exp] 280 / 7e-97 AT1G68000 256 / 2e-87 phosphatidylinositol synthase 1 (.1) Lus10023471 [exp] 46 / 1e-05 AT2G39290 332 / 2e-113 phosphatidylglycerolphosphate synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01066 [poplar] [flax] CDP-OH_P_transf CDP-alcohol phosphatidyltransferase
Representative CDS sequence Show only first row Show all	>Potri.004G175600.2 pacid=42794981 polypeptide=Potri.004G175600.2.p locus=Potri.004G175600 ID=Potri.004G175600.2.v4.1 annot-version=v4.1 ATGGCCAAGAACAATAAGTCAGGACCAAGAAAACCAGGAAAATTAAGTGTTTATCTTTATATTCCCAATATTATTGGGTATACAAGAGTGTTCATGAATT GCTATGCATTTGCTATATGTTTTTCTAACAAATGGCTATTTTGCGCTCTTTATTTTATCAGCTTTGTTTGTGATGGTGTTGATGGTTGGTGTGCTCGCAA ATTCAATCAAGTTTCAACTTTTGGAGCTGTTTTGGACATGGTAACAGACAGGATTAGCACAGCTTGCCTACTAGTAATTCTTTCCCAAGTATACAGGCCT GGCATGGTTTTTCTGTCATTGCTTGCCCTTGACATTGCTAGCCACTGGCTGCAGATGTACAGCACTTTCTTGCTAGGCAAAGTTAGCCATAAAGATGTGA AAGACAGCACTAATTGGCTCTTCAAGGCTTACTATGGAAATCGTATGTTTATGGCTTATTGTTGCGTAGCATGTGAGGTTCTTTATATTACTCTGTTTCT TCTTGCTAAGAATGACTCTGAAAAGTTGATGGATGTTTTAAAGGCTTCTATAACAGAGGGTTCACCCATCTCTGTCCTAGTTGGTTTAAGTTTGTTCGGA TGGGCAATCAAACAACTTGTGAATGTGATTCAGATGAAAACTGCTGCTGATATTTGCGTGCTTCATGATATCAACAAAAAGGTGAGGCCGTGA
AA sequence Show only first row Show all	>Potri.004G175600.2 pacid=42794981 polypeptide=Potri.004G175600.2.p locus=Potri.004G175600 ID=Potri.004G175600.2.v4.1 annot-version=v4.1 MAKNNKSGPRKPGKLSVYLYIPNIIGYTRVFMNCYAFAICFSNKWLFCALYFISFVCDGVDGWCARKFNQVSTFGAVLDMVTDRISTACLLVILSQVYRP GMVFLSLLALDIASHWLQMYSTFLLGKVSHKDVKDSTNWLFKAYYGNRMFMAYCCVACEVLYITLFLLAKNDSEKLMDVLKASITEGSPISVLVGLSLFG WAIKQLVNVIQMKTAADICVLHDINKKVRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68000		ATPIS1	phosphatidylinositol synthase ...		Potri.004G175600 [exp]	0	1
AT5G23200			unknown protein		Potri.005G092000 [exp]	1.41	0.8619
AT3G48540			Cytidine/deoxycytidylate deami...		Potri.015G096400 [exp]	3.46	0.8463
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Potri.003G038800 [exp]	6.63	0.8337	Pt-ATMSI4.2,NFC907
AT2G01720			Ribophorin I (.1)		Potri.008G038700 [exp]	10.39	0.8038
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.014G023000 [exp]	10.95	0.8288	CYCD1.4
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Potri.006G159200 [exp]	11.35	0.8360
AT5G53045			unknown protein		Potri.012G017000 [exp]	11.66	0.7973
AT3G20070		TTN9	titan9 (.1.2)		Potri.009G049500 [exp]	12.20	0.7183	TTN9.1
AT4G30850		HHP2	heptahelical transmembrane pr...		Potri.018G102400 [exp]	16.52	0.7894
AT3G19340			Protein of unknown function (D...		Potri.002G237700 [exp]	19.07	0.8012

Compare expression of checked genes

Potri.004G175600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.