Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16800 379 / 2e-130 high-affinity nickel-transport family protein (.1) AT4G35080 355 / 3e-121 high-affinity nickel-transport family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G135600 [exp] 557 / 0 AT2G16800 358 / 3e-122 high-affinity nickel-transport family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019792 [exp] 434 / 3e-152 AT2G16800 422 / 2e-147 high-affinity nickel-transport family protein (.1) Lus10014116 [exp] 414 / 2e-144 AT2G16800 411 / 4e-143 high-affinity nickel-transport family protein (.1) Lus10027851 [exp] 342 / 3e-116 AT2G16800 386 / 1e-133 high-affinity nickel-transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [poplar] [flax] LysE PF13386 [poplar] [flax] DsbD_2 Cytochrome C biogenesis protein transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.004G175700.1 pacid=42794407 polypeptide=Potri.004G175700.1.p locus=Potri.004G175700 ID=Potri.004G175700.1.v4.1 annot-version=v4.1 ATGGAGAGGCTTCTGTATTCTCCTCCTTCTACTCCCTTAAAAACCCACCTCAAAAGGCCCACTCCTTTGCTCCCTAGACTCAGCAAACTTGAGTCACCAA AACTTGGTTTTCCCTCGTTGACAAGGCCTGGGTTCAGGAGAGTCAACTCGGTCTCTTGCAAATATGAGAATCCATCAACCCCACCTCTTCAGGTTGATTC TTCAACTGGGTCGACGCCAAAATCCAACCATGTCAAACAGATCGTTGGTGGAGTTTCTGTGAAGTCTAAGGCAGCTACTCTTGGGATATTCGTGGTAGTT TCTGGTATTATTATGTTCTTAATCCACCCAGTTTTCGCTTTTCCAGCTTTTGCAACCTTCCAAACTGCTGCCAATACCGGGGGGGCTGCTGCTGCTGCAG GGGCAAAACTTATGCGAACTGAACTACTGAACAGTGGTTGGGCTGGTTTCTTTGCTGGTTGCTTACACACATTGTCAGGGCCTGACCACCTTGCTGCTTT GGCTCCACTCTCAATCGGTCGATCCCGGATGGAAAGCGCTGCTGTTGGAGCTCTTTGGGGTTGTGGGCACGATGCAGGTCAGGTCATATTTGGCTTGCTC TTTCTACTCTTAAAGGACCGACTCCACATTGAAGTTATCAGAACATGGGGCACAAGAGTGGTCGGTATAACTCTACTTGTTATTGGTGCTATGGGTATTA GGGAGGCCTCGGAAGTCCCAACTCCATGTGTTGCCTTAGAAAATGGTGACCGTGATGTTAGTGTCTATGAAGCACTAGAAACCCCAACAGTAGGGAAGAA GAAAAGGGTCGGTTTTGCTACTTTTGCTACCGGTATTGTCCATGGGCTACAGCCAGATGCATTGATGATGGTGTTGCCTGCACTGGCATTGCCTTCTCGT TTGGCCGGAGCTGCATTTCTAATCATGTTCTTGTTTGGAACTGTGGTTGCAATGGGTAGCTACACGGTGTTTATAGGGTCATGTAGTGAAGCATTAAAAG ACCGAATACCCAGAATAACAGAGAAACTGACATGGGCTTCTTCCCTTGTAGCAATTTCCCTCGGCCTCGGCCTTATCATTAGCCAGTTTTTCGGATTCAG TTTATATTGA
AA sequence Show only first row Show all	>Potri.004G175700.1 pacid=42794407 polypeptide=Potri.004G175700.1.p locus=Potri.004G175700 ID=Potri.004G175700.1.v4.1 annot-version=v4.1 MERLLYSPPSTPLKTHLKRPTPLLPRLSKLESPKLGFPSLTRPGFRRVNSVSCKYENPSTPPLQVDSSTGSTPKSNHVKQIVGGVSVKSKAATLGIFVVV SGIIMFLIHPVFAFPAFATFQTAANTGGAAAAAGAKLMRTELLNSGWAGFFAGCLHTLSGPDHLAALAPLSIGRSRMESAAVGALWGCGHDAGQVIFGLL FLLLKDRLHIEVIRTWGTRVVGITLLVIGAMGIREASEVPTPCVALENGDRDVSVYEALETPTVGKKKRVGFATFATGIVHGLQPDALMMVLPALALPSR LAGAAFLIMFLFGTVVAMGSYTVFIGSCSEALKDRIPRITEKLTWASSLVAISLGLGLIISQFFGFSLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16800			high-affinity nickel-transport...		Potri.004G175700 [exp]	0	1
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.005G175400 [exp]	6.32	0.9273
AT2G47485			unknown protein		Potri.002G200000 [exp]	8.94	0.9529
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Potri.005G092900 [exp]	8.94	0.9368
AT2G01870			unknown protein		Potri.001G257400 [exp]	9.74	0.9539
AT4G28210		EMB1923	embryo defective 1923 (.1)		Potri.013G146900 [exp]	16.97	0.9354
AT1G27385			unknown protein		Potri.003G172000 [exp]	17.34	0.9378
AT4G11175			Nucleic acid-binding, OB-fold-...		Potri.018G038900 [exp]	17.66	0.9475
AT4G24700			unknown protein		Potri.015G084200 [exp]	20.00	0.9467
AT4G14870		SECE1	secE/sec61-gamma protein trans...		Potri.008G153400 [exp]	23.62	0.9414
AT3G24590		PLSP1	plastidic type i signal peptid...		Potri.018G081800 [exp]	24.33	0.9374

Compare expression of checked genes

Potri.004G175700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.