Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HPR.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68010 659 / 0 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT1G17745 125 / 6e-31 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT4G34200 119 / 1e-28 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT3G19480 115 / 1e-27 D-3-phosphoglycerate dehydrogenase (.1) AT1G79870 111 / 2e-27 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 93 / 7e-21 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 86 / 3e-18 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G72190 77 / 5e-15 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT5G14780 64 / 9e-11 FDH formate dehydrogenase (.1) AT1G01510 58 / 8e-09 AN ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G022800 [exp] 126 / 4e-31 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1) Potri.002G122700 [exp] 125 / 6e-31 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.010G249600 [exp] 123 / 3e-30 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.001G300900 [exp] 123 / 4e-30 AT4G34200 885 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.008G009500 [exp] 119 / 6e-29 AT1G17745 826 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.009G096600 [exp] 119 / 1e-28 AT4G34200 888 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.003G052700 [exp] 109 / 9e-27 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G183700 [exp] 96 / 9e-22 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073400 [exp] 95 / 4e-21 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014115 [exp] 692 / 0 AT1G68010 700 / 0.0 hydroxypyruvate reductase (.1.2) Lus10019793 [exp] 692 / 0 AT1G68010 709 / 0.0 hydroxypyruvate reductase (.1.2) Lus10027868 [exp] 122 / 6e-30 AT4G34200 971 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10014096 [exp] 120 / 3e-29 AT4G34200 967 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10025796 [exp] 116 / 4e-29 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10019818 [exp] 119 / 6e-29 AT4G34200 966 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10035866 [exp] 115 / 6e-29 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025795 [exp] 115 / 1e-28 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 107 / 9e-26 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10037552 [exp] 106 / 2e-25 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF02826 [poplar] [flax] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G175800.9 pacid=42794659 polypeptide=Potri.004G175800.9.p locus=Potri.004G175800 ID=Potri.004G175800.9.v4.1 annot-version=v4.1 ATGGCAAAACCAATTTCAATTGAAGTCTACAATCCAAATGGCAAGTACAGGGTTGTTAGCACCAAATCAATGCCTGGAACTCGCTGGATCAATCTCTTGA TTGAGCAAGACTGTCGTGTTGAGATATGCACCCAGCAGAAAACAATACTGTCTGTTGAGGATATTATTGCTCTAATTGGTGATAAGTGTGATGGTGTAAT AGGCCAGTTGACAGAAGATTGGGGGGAGACATTATTTGCAGCATTAAGCAGGGCAGGTGGAAAGGCATTTAGTAACATGGCTGTTGGTTACAATAATGTT GATGTAAATGCTGCTAACAAGCATGGTGTTGCTGTTGGAAATACTCCTGGAGTGCTTACAGAGACAACTGCAGAGTTGGCAGCATCACTTTCTTTAGCTG CTGCTAGAAGAATTGTTGAAGCAGACCAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCACCTGTTTGTTGGAAACTTGCTCAAAGGACAAAC TGTTGGTGTCATTGGAGCTGGTCGCATTGGATCCGCTTATGCCAGAATGATGGTTGAAGGGTTCAAAATGAATCTTATTTACTATGATCTCTACCAATCC ACACGCTTAGAGAAGTTTGTTACAGCTTATGGTGAATTCCTAAAAGCTAACGGCGAGCAGCCAGTTACTTGGAAAAGAGCAGCCAGCATGGATGAGGTGC TTCGAGAGGCAGATGTGATAAGTCTTCACCCAATATTGGACAAAACCACTTACCATTTGATCAACAAGGAAAGCCTTGCAACAATGAAGAAGGAAGCAAT CCTTGTAAACTGCAGTAGGGGTCCAGTGGTTGATGAAGTAGCCCTTGTAGAGCATTTGAAACAAAATCCTATGTTTCGTGTTGGCCTTGATGTCTTTGAG GATGAACCTTACATGAAGCCCGGGCTTGCTGACATGAAGAATGCTGTTGTTGTACCTCACATTGCTTCTGCTTCCAAGTGGACTCGTGAAGGAATGGCAA CACTAGCTGCTCTGAATGTCCTGGGAAAGATTAAAGGGTATCCAGTGTGGGGCGATCCGAATGGGGTAGCACCATTTTTGAATGAGAATGCTCCTCCACC TGCTGCAAGTCCAAGTATTGTGAACGCAAAAGCCTTAGGTAATGCAAAGGACTTGGATAATTGTTTGCCAAGTGAATCTCCAGTCTCCACATTTGAGGCA TCTCTTGACCTTGTTATCTTGCTTTTGCCACAGGTCTACCTGTTTCAAAGCTATAAATCATGGAAGGCTGATCATCATCTAGGGGCCTTGTGGTTTATAA TGTGTGTGTTTCTGAATATCGGATCATGGTCTCTACTATGA
AA sequence Show only first row Show all	>Potri.004G175800.9 pacid=42794659 polypeptide=Potri.004G175800.9.p locus=Potri.004G175800 ID=Potri.004G175800.9.v4.1 annot-version=v4.1 MAKPISIEVYNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQQKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNV DVNAANKHGVAVGNTPGVLTETTAELAASLSLAAARRIVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQS TRLEKFVTAYGEFLKANGEQPVTWKRAASMDEVLREADVISLHPILDKTTYHLINKESLATMKKEAILVNCSRGPVVDEVALVEHLKQNPMFRVGLDVFE DEPYMKPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGDPNGVAPFLNENAPPPAASPSIVNAKALGNAKDLDNCLPSESPVSTFEA SLDLVILLLPQVYLFQSYKSWKADHHLGALWFIMCVFLNIGSWSLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Potri.004G175800 [exp]	0	1	Pt-HPR.1
AT4G35090		CAT2	catalase 2 (.1.2)		Potri.005G100400 [exp]	1.00	0.9901	CAT2
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Potri.010G089400 [exp]	2.44	0.9836	PSAD1.1
AT1G79040		PSBR	photosystem II subunit R (.1)		Potri.011G142200 [exp]	4.47	0.9834
AT3G14420			Aldolase-type TIM barrel famil...		Potri.011G112700 [exp]	5.00	0.9830
AT2G26500			cytochrome b6f complex subunit...		Potri.004G147300 [exp]	6.24	0.9788
AT1G49975			unknown protein		Potri.001G292000 [exp]	6.32	0.9794
AT1G64680			unknown protein		Potri.001G083300 [exp]	7.00	0.9815
AT2G39730		RCA	rubisco activase (.1.2.3)		Potri.008G058500 [exp]	7.14	0.9754	RCA.2
AT3G44020			thylakoid lumenal P17.1 protei...		Potri.009G155700 [exp]	9.00	0.9704
AT3G26650		GAPA-1, GAPA	GLYCERALDEHYDE 3-PHOSPHATE DEH...		Potri.002G220566 [exp]	9.79	0.9804

Compare expression of checked genes

Potri.004G175800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.