Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16920 1045 / 0 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) AT2G33770 400 / 9e-123 ATUBC24, UBC24, PHO2 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) AT1G53025 254 / 2e-73 Ubiquitin-conjugating enzyme family protein (.1) AT3G15355 245 / 2e-69 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) AT1G53023 218 / 2e-63 Ubiquitin-conjugating enzyme family protein (.1) AT5G05080 54 / 1e-07 ATUBC22, UBC22 ubiquitin-conjugating enzyme 22 (.1.2) AT1G14400 52 / 3e-07 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2) AT2G02760 52 / 3e-07 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT5G53300 49 / 9e-07 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT3G12775 52 / 1e-06 ubiquitin-conjugating enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G136000 [exp] 1583 / 0 AT2G16920 1069 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.011G052600 [exp] 395 / 8e-121 AT2G33770 796 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.004G043500 [exp] 388 / 5e-118 AT2G33770 823 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.001G400300 [exp] 265 / 7e-76 AT3G15355 383 / 5e-125 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.011G118800 [exp] 261 / 2e-74 AT3G15355 411 / 1e-135 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.013G130800 [exp] 246 / 1e-70 AT3G15355 334 / 1e-107 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.008G104400 [exp] 241 / 2e-70 AT3G15355 267 / 7e-84 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.010G146500 [exp] 234 / 3e-68 AT2G33770 255 / 3e-77 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.013G108500 [exp] 108 / 3e-25 AT2G16920 152 / 9e-41 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025070 [exp] 1144 / 0 AT2G16920 1209 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10034472 [exp] 900 / 0 AT2G16920 907 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10001214 [exp] 288 / 5e-85 AT2G33770 508 / 9e-171 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10005854 [exp] 295 / 6e-85 AT2G33770 785 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10039831 [exp] 252 / 2e-73 AT3G15355 335 / 6e-110 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10028151 [exp] 252 / 1e-72 AT1G53025 388 / 2e-129 Ubiquitin-conjugating enzyme family protein (.1) Lus10018596 [exp] 245 / 5e-71 AT3G15355 339 / 3e-111 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10037778 [exp] 224 / 7e-65 AT2G16920 256 / 9e-81 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10042852 [exp] 213 / 2e-59 AT1G53025 318 / 5e-103 Ubiquitin-conjugating enzyme family protein (.1) Lus10016921 [exp] 198 / 1e-56 AT2G16920 235 / 3e-70 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G176000.5 pacid=42795185 polypeptide=Potri.004G176000.5.p locus=Potri.004G176000 ID=Potri.004G176000.5.v4.1 annot-version=v4.1 ATGTGTTTTCAGCTAGAAAATATGCAAAATGAAAGTAGTTCCAAAGTCAACGGGTTTGTCGATAGTGGTGGTGATAAAAACAGCTTGGATCAAAGTGGTT CTATGGCAAATGGGTTGGTTTGTGAGTTGAAAGTTGATAGTGAAAACAATGTTAAAAAACTGGATGAGGTTGTTGGGAACTTGAATAATGTGCCATATAT TTATGGACAAGATATTGTTAGACATAAAATGCACAATGTGGTTGGGGTAGTGAGTGAAGTTGCTGGTGAGTCAGATTCGGATGGAAGTATTATGGATGAT GATGATGATGATGATGAGGATGAGGACGACGACGACGACGATGACGAAGATGAGTGTGATGTCGATGAAGATGCTGGCAATGAGGGAGCTGATGATGATG GTAATGATAATACCAATGGCGATAGGAGTGAAGGGAGCGATAATTATAAGAGTGAAACTCTTCAGACTGATGAGGTTCGAGTAGTTTGGATGGGTGATGT TAAACCAGTTCAACATGTCAATGATGTAACTGTCATTGATCGAGGATTCTTACACGGGGACTATGTTGCATCTGCTTCAGATCCAACAGGGCAAGTAGGT GTTGTGGTGGATGTTAATATCTCTGTTGATTTGTTAGCTCCTGATGGATCCGTTAGAAAAGACATTTCATCCATAAATTTGGTGCGTGTTAGGGAATTTT CTGTTGGTGACTTTGTGGTCTTTGGTCCCTGGTTAGGCAGAGTTGATGATGTTGTAGATGATGTGACTGTGTTATTTGATGATGGTTCTGTGTGCAAAGT AAAGGGGGCTGAGCCACTGCATCTAAAACCAATTTCCAAGGGTATCTTTGAGGAAGATGAACATTTTCCTTACCATCCTGGCCAGCGTGTAAGGGCTACC TCATCATCAGTTTTTAAAAACTCTCGGTGGCTATCCGGCTTGTGGGAAGCTAATAGATTGGAAGGTACTGTTACTAAAGTTACATCTGGATCAGTTTTCA TCTATTGGATAGCTTCTGCTGGCTATGGACCTGATTCTTCAACTACCCCTGCTGAAGAGCAGGATCCAAAGAACTTAGAACTGCTGTCTTGTTTTGCACA TGCAAGTTGGCAAGTGGGTGACTGGTGTCTTCTCCCATCATCTGTTGCTCAATCATCTTCTGTTACTTTAGACAAGGATTTATTGAAGTTGGGAATCCAT GACCCAGCCAAATGTGAATTAGATTCTAGTCAACTGGGAAATGGATGTGATTCAGAAGGAGTTGCAAATGAGGAAGTAGATGATATGAATGGATCGATGG CAATTGATCCAGTGACAACACCGGATGGAAATTTAGCCATTATTGCAAGTAATGAATCTAGCTCTTGTGGTAGTTCAACATCAGTTTCAAAGGTGCCTGC CCATCGCAGAAAGATACGTAAAGTTTTAATCAGAAGAGAAAAGAAGAGTATAAAAAAAGAGGAAGATTTTGAAAGAGCCCTTTTGATTGTCAACACCAGG ACAAGGGTCGATATAGCATGGCAGGATGGAGCTATAGAACGTGGGCTGAATTCTACAACATTGATTCCAATTGATAGTCCTGGTGATCATGAATTCGTTG CTGAACAGTATGTTGTGGAGAAGGCCTCTGATGATGTTGATAACTCATTTGAATCTAGACGTGTTGGTGTTGTTAAAAGCCTTAATGCAAAAGAGCGAAC AGCTTGTGTGAAGTGGTTAAAGCCAGTTACCAGGGCAGAAGATCCTCGTGAGTTTGACAAGGATGAAATTGTAAGTGTGTATGAGCTGGAGACTCATCCA GATTATGACTATTCCTATGGGGATGTAGTCGTTCGATTATCCCCGGTTTCTGTGTCTGATCAAACCACCTCTGATTTGGAAACTATTGGGGAATCAAGGC AGCAAAGTGGACAAAGTGAGATTATGAATACACAAAAGTGCTTAGGACATAAGAAAGGAGAGGATGCACCGAGTAATGATGTTTCTATGGACTCCTCAGA TCTCTCTTGGGTTGGGAATATATCTGGTCTTAGGAATGGTGATCTCGAAGTCACATGGGCTGATGGGATGGTTTCAATGGTTGGACCTCAAGCAATTTTT GTGGTTGGTCGAGATGACGATGATGATTCAGTTTCAGCTGGGAGTGAATTAAGTGAAGCTGCAGCTAGTTGGGAAACAGTTGATGATGATGTGAGGGACA CTCATGATTATACTCAAGAGGCAGTTGTGCTGCAAGATGCAACTGGCATGAACTCAGAGGAGGAAGAGAGTGTGGAGAATTATAGTTCTGGAAGGAATGC AGCACTTAATTTTCCACTCACTGCACTTGACTTTGTTGCAAGATTGGCCACTGGAATATTTTCACGAGGTCAGAAAAATATCGACCCAGATTTTTCAGGC TACCAAGGTGAAAACAAACTGCATTCTCAGGGAACAAACTGTATTTCTGAAGAAAAAGATTCCAGTGATGAGTCCAGTGCTGAAAAATCTAATGTCAATA ATAACTGTGGTATGCAAAATACCAATGAAAAAGACAAACATGTGTCAATGGAGGACCCAGGATCATCAAATGCAGAAGAAACTTCATGCAATTTAAGCAC TGAAAAGTCAAATGCCATGACATGTTCTGAGGCTCGGATTCACCACTACTTTAAACATTTTGACACAGCTGAAGATCCTCTGGACCATCATTTTCTTGAT TCAAATAGACTGATCAAAAATGGAAGGAAGTGGCTTAAGAAGGTTCAACAAGACTGGAACATCCTCCAGAACAACCTGCCAGATGAGATCTACGTACGGG TTTATGAGGATCGAATGGATCTCTTAAGAGCAACAATAATTGGGGCATATGGAACACCTTACCAAGATGGACTCTTCTTTTTTGACTTTCACCTCCCACG AGAGTATCCTGATGTCCCTCCTTCAGCATACTACCATTCTGGTGGTTGGCGAATAAATCCAAATTTGTACGAGGAGGGGAAGTTGTGCCTTAGCCTTTTA AATACCTGGACTGGCAGAGGAAATGAAGTCTGGCACTCGACTTCTAGCATCCTTCAAGTCCTAGTTTCACTTCAAGGGTTGGTGCTAAATTCTAGACCAT ATTTTAATGAAGCTGGATATGATAAGCAGATCGGGACAGCTGAAGGAGAGAAAAAATCGTTGTCATATAACGAGAATACTTTCTTGCTAAACTGCAAGAC AATGATGTATCTTATGCGAAAACCCCCCAAGGATTTTGAATGCTTGGTAAAGGAGCATTTCAGGAGGCGTGGTTACTACATTCTTAAGGCCTGTGATGCG TATATGCAAGGCAATTTAATTGGATCTCTCTCTCGAGATGGCTCTATAAGCAGTAAGGAAAGTTCCAATCTAACTTCGGTTGGTTTCAAGTTGATGTTAG CGAAGATTGTGCCAAAGCTTTACTTGGCATTGAATGAGGTTGGCGCTGATTGTCATGAATTTAAGCATCTGCTACAGTCATAA
AA sequence Show only first row Show all	>Potri.004G176000.5 pacid=42795185 polypeptide=Potri.004G176000.5.p locus=Potri.004G176000 ID=Potri.004G176000.5.v4.1 annot-version=v4.1 MCFQLENMQNESSSKVNGFVDSGGDKNSLDQSGSMANGLVCELKVDSENNVKKLDEVVGNLNNVPYIYGQDIVRHKMHNVVGVVSEVAGESDSDGSIMDD DDDDDEDEDDDDDDDEDECDVDEDAGNEGADDDGNDNTNGDRSEGSDNYKSETLQTDEVRVVWMGDVKPVQHVNDVTVIDRGFLHGDYVASASDPTGQVG VVVDVNISVDLLAPDGSVRKDISSINLVRVREFSVGDFVVFGPWLGRVDDVVDDVTVLFDDGSVCKVKGAEPLHLKPISKGIFEEDEHFPYHPGQRVRAT SSSVFKNSRWLSGLWEANRLEGTVTKVTSGSVFIYWIASAGYGPDSSTTPAEEQDPKNLELLSCFAHASWQVGDWCLLPSSVAQSSSVTLDKDLLKLGIH DPAKCELDSSQLGNGCDSEGVANEEVDDMNGSMAIDPVTTPDGNLAIIASNESSSCGSSTSVSKVPAHRRKIRKVLIRREKKSIKKEEDFERALLIVNTR TRVDIAWQDGAIERGLNSTTLIPIDSPGDHEFVAEQYVVEKASDDVDNSFESRRVGVVKSLNAKERTACVKWLKPVTRAEDPREFDKDEIVSVYELETHP DYDYSYGDVVVRLSPVSVSDQTTSDLETIGESRQQSGQSEIMNTQKCLGHKKGEDAPSNDVSMDSSDLSWVGNISGLRNGDLEVTWADGMVSMVGPQAIF VVGRDDDDDSVSAGSELSEAAASWETVDDDVRDTHDYTQEAVVLQDATGMNSEEEESVENYSSGRNAALNFPLTALDFVARLATGIFSRGQKNIDPDFSG YQGENKLHSQGTNCISEEKDSSDESSAEKSNVNNNCGMQNTNEKDKHVSMEDPGSSNAEETSCNLSTEKSNAMTCSEARIHHYFKHFDTAEDPLDHHFLD SNRLIKNGRKWLKKVQQDWNILQNNLPDEIYVRVYEDRMDLLRATIIGAYGTPYQDGLFFFDFHLPREYPDVPPSAYYHSGGWRINPNLYEEGKLCLSLL NTWTGRGNEVWHSTSSILQVLVSLQGLVLNSRPYFNEAGYDKQIGTAEGEKKSLSYNENTFLLNCKTMMYLMRKPPKDFECLVKEHFRRRGYYILKACDA YMQGNLIGSLSRDGSISSKESSNLTSVGFKLMLAKIVPKLYLALNEVGADCHEFKHLLQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.004G176000 [exp]	0	1
AT5G23110			Zinc finger, C3HC4 type (RING ...		Potri.005G093000 [exp]	4.24	0.7775
AT2G47020			Peptide chain release factor 1...		Potri.014G114000 [exp]	5.47	0.7789
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.005G254000 [exp]	5.83	0.7082
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Potri.002G137100 [exp]	10.34	0.7812
AT5G38640			NagB/RpiA/CoA transferase-like...		Potri.017G111800 [exp]	11.31	0.7339
					Potri.008G119000 [exp]	12.64	0.7633
AT1G70060		SNL4	SIN3-like 4 (.1)		Potri.010G038700 [exp]	17.74	0.7207
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Potri.010G052600 [exp]	26.83	0.7072
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Potri.005G123000 [exp]	27.27	0.6212
AT4G03000			RING/U-box superfamily protein...		Potri.010G027900 [exp]	29.56	0.6768

Compare expression of checked genes

Potri.004G176000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.