Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16860 408 / 2e-144 GCIP-interacting family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G136400 [exp] 47 / 9e-06 AT2G16900 132 / 7e-35 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) Potri.004G176100 [exp] 47 / 1e-05 AT2G16900 154 / 3e-42 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039220 [exp] 392 / 1e-137 AT2G16860 421 / 1e-149 GCIP-interacting family protein (.1) Lus10027464 [exp] 390 / 8e-137 AT2G16860 416 / 1e-147 GCIP-interacting family protein (.1) Lus10027466 [exp] 44 / 7e-06 AT2G16860 56 / 4e-11 GCIP-interacting family protein (.1) Lus10026277 [exp] 47 / 1e-05 AT4G35110 187 / 6e-55 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) Lus10042396 [exp] 47 / 1e-05 AT4G35110 190 / 6e-56 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08231 [poplar] [flax] SYF2 SYF2 splicing factor
Representative CDS sequence Show only first row Show all	>Potri.004G176200.1 pacid=42794587 polypeptide=Potri.004G176200.1.p locus=Potri.004G176200 ID=Potri.004G176200.1.v4.1 annot-version=v4.1 ATGGCTGATGAAAGGAGAGTGCATCCTGATTGCATAAATGCGTCGAATCCTTACCACGAATGTGTCGAATATTGCTTTATAAAAATCGCAGAAGCGAAAG CACGTGCGGAGATTAAAGAGACAGAAGTTGTGCAAGCAAAAGGTGGAATTGGTTGGTCTAGTTCACAAGCTCCTGAGCAAGGTGAAGAGCTTGATGAAGA AAGACCAGATCATGAACATTCAGAAGATGATGATGACCGTGCTGTACTGGATAATGTGGAGGGAGATGTAACACAACTTACTGGGAGAAAGAAAAAGTTG TTTGAGTTGAGACTTAAGATGAATGAGGCAAGAAAAGCCAATCAAACTGCTATGGTATCTGAAAAAAAGAAAATGGAAGCTCCTTCAGAATCAAGGGGCA TTTCTAAACAGAAATGGCTAGAGGACAGGAAGAAAAAGATAGGCAAGCTTCTAGATGCAAATGGCTTGGACATGACAAAGGCATACATGCTAGACACACA AGAGGCAGCAGAGGTAAAATACAAGAAATGGGAGAAGGATCCTGCGCCATTTGGTTGGGATGTTTTCAATCAGAAGACACTATACAATGCATATAAAAAA CGGACCAAGAATGTTGATGTTGACCTAGAAGAATATAACAAAATGAAAGAAGCTGATCCTGAGTTCTACCGTGAAGCCTCAAGCCTTCAATATGGAAAGG CTCCAAAGACTTCTGAGGAAAAGATTGAAAGGATGGTAAAGGAACTCAAGGACCGGGACGAGAATCGGAAGTCATTTAGCCGAAGGAGGAGATTCCGAGA TGAGAAGGATATTGACTCAATCAATGACCGAAATGAACATTTCAACAAGAAAATTGAGCGTGCCTTTGGTAAATACACACTGGAGATCAAGAATAATCTT GAGCGAGGAACTGCATTGCCTGACTAA
AA sequence Show only first row Show all	>Potri.004G176200.1 pacid=42794587 polypeptide=Potri.004G176200.1.p locus=Potri.004G176200 ID=Potri.004G176200.1.v4.1 annot-version=v4.1 MADERRVHPDCINASNPYHECVEYCFIKIAEAKARAEIKETEVVQAKGGIGWSSSQAPEQGEELDEERPDHEHSEDDDDRAVLDNVEGDVTQLTGRKKKL FELRLKMNEARKANQTAMVSEKKKMEAPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEVKYKKWEKDPAPFGWDVFNQKTLYNAYKK RTKNVDVDLEEYNKMKEADPEFYREASSLQYGKAPKTSEEKIERMVKELKDRDENRKSFSRRRRFRDEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNL ERGTALPD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16860			GCIP-interacting family protei...		Potri.004G176200 [exp]	0	1
AT5G65520			Tetratricopeptide repeat (TPR)...		Potri.002G111300 [exp]	8.12	0.9037
AT3G15780			unknown protein		Potri.001G192500 [exp]	8.18	0.9148
AT1G26800			RING/U-box superfamily protein...		Potri.004G122000 [exp]	13.74	0.8795
AT3G52105			unknown protein		Potri.006G054200 [exp]	16.43	0.9044
AT4G34150			Calcium-dependent lipid-bindin...		Potri.009G097900 [exp]	16.88	0.8825
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Potri.011G024100 [exp]	17.20	0.9135
AT5G53330			Ubiquitin-associated/translati...		Potri.012G033300 [exp]	19.79	0.9060
AT3G19950			RING/U-box superfamily protein...		Potri.012G036700 [exp]	22.31	0.8412
AT5G53330			Ubiquitin-associated/translati...		Potri.015G023600 [exp]	25.09	0.8675
AT1G62960		ACS10	ACC synthase 10 (.1)		Potri.003G117700 [exp]	25.88	0.8956	Pt-ACS10.1

Compare expression of checked genes

Potri.004G176200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.