Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47900 401 / 1e-137 Protein of unknown function (DUF1624) AT5G27730 347 / 5e-116 Protein of unknown function (DUF1624) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G136700 [exp] 739 / 0 AT5G47900 395 / 2e-135 Protein of unknown function (DUF1624) Potri.001G071500 [exp] 431 / 4e-149 AT5G47900 519 / 0.0 Protein of unknown function (DUF1624) Potri.003G159200 [exp] 417 / 1e-143 AT5G47900 492 / 1e-172 Protein of unknown function (DUF1624) Potri.014G123800 [exp] 371 / 2e-125 AT5G47900 442 / 1e-152 Protein of unknown function (DUF1624) Potri.006G122500 [exp] 362 / 1e-121 AT5G27730 521 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.013G016900 [exp] 347 / 5e-116 AT5G27730 669 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.005G025200 [exp] 315 / 1e-103 AT5G27730 595 / 0.0 Protein of unknown function (DUF1624) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027468 [exp] 525 / 0 AT5G47900 380 / 9e-130 Protein of unknown function (DUF1624) Lus10039223 [exp] 489 / 3e-173 AT5G47900 349 / 1e-117 Protein of unknown function (DUF1624) Lus10019798 [exp] 480 / 2e-169 AT5G47900 329 / 5e-110 Protein of unknown function (DUF1624) Lus10010030 [exp] 405 / 7e-139 AT5G47900 433 / 2e-149 Protein of unknown function (DUF1624) Lus10014112 [exp] 350 / 6e-118 AT5G47900 237 / 4e-74 Protein of unknown function (DUF1624) Lus10020653 [exp] 339 / 1e-112 AT5G27730 624 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10021514 [exp] 326 / 2e-107 AT5G27730 540 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10022615 [exp] 320 / 5e-105 AT5G27730 532 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10036333 [exp] 266 / 8e-87 AT5G47900 269 / 6e-89 Protein of unknown function (DUF1624) Lus10000090 [exp] 253 / 7e-83 AT5G47900 174 / 5e-54 Protein of unknown function (DUF1624)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0316 [poplar] [flax] Acyl_transf_3 PF07786 [poplar] [flax] DUF1624 Protein of unknown function (DUF1624)
Representative CDS sequence Show only first row Show all	>Potri.004G176400.2 pacid=42795225 polypeptide=Potri.004G176400.2.p locus=Potri.004G176400 ID=Potri.004G176400.2.v4.1 annot-version=v4.1 ATGGCAGACTTACTGCACAAGCCATTGCTGGACATTGAGGAACAACCACGGACCAGTAAGAAAACCCCACGTGTTGCCTCTCTTGATGTCTTTCGTGGTC TCTGTGTCTTTCTAATGATGCTAGTTGATTATGGCGGGGCAATTGTTCCAATTATAGCTCATTCTCCATGGAACGGACTTCACTTGGCAGATTTTGTGAT GCCCTTCTTTCTTTTCACTGCTGGGGTTTCTCTTGCTCTTGTTTACAAGAGAGTACCAAACAGAATAGAAGCCACACGGAAGGCGGTGCTAAGGGCAGTA GAACTATTTTTGCTAGGTGTAATTCTTCAAGGTGGCTACTTTCATGGAATAAATTCCTTGACGTATGGTGTTGACATGAAAAGAATACGTTGGCTTGGAA TTTTGCAGAGAATATCTATTGGATACATTTTTGCTGCTTTATGTGAGATCTGGCTTTCATGTCGATCGCGGAGAGATGTAAGCTTTCTCAAGAGTTATTA CTGGCATTGGGGTGCAGCGTTTTCACTATCTGCAATATACTGGGGATTATTGTATGGTTTATATGTTCCGGATTGGCAATTTGAAATGTCCAATGCAACT TCCTCTGTGTTTCCAACAAATCACAGCTATGTTTACATGGTAAAATGTTCTGTAAGGGGTGATCTTGGACCTGCTTGTAATTCAGCTGGAATGATTGATC GCTATGTACTTGGCATTGATCACCTATATAAAAAACCTGTTTACAGAAACCTGAAGGAGTGCAATATGTCCACCAATGGCCAAGTTCCAGAGAGTGCACC TTCCTGGTGTCATGCTCCTTTTGATCCTGAAGGTGTTTTAAGCTCCATAACAGCTGCAGTGGCTTGCATAATTGGACTTCAATATGGTCATAGTCTTGCT CACTTGCAGGACCACAAGCAACGCATGCAAAACTGGATCCTGTTCTCATTGTCACTTCTTTTGGTTGGATTGCTCCTTGCTGTTGTAGGCGATCCCGTGA ATAAATCCTTGTACACATTTGGCTATATGCTGATTACTTGTGCTTCAGCGGGGATCACATATTCTGCTATTTACTTGTTGGTAGATGTATATGGTTATAG ATGCTTGACGTTTGCTTTGGAGTGGATGGGAAAGCATTCTTTGAGTATTTTCGTTCTCATAACCTCCAACTTAGCTGTTATAGCAATACAAGGATTCTAC TGGAAAGCTCCTGAAAATAACTTGATTCAATGGATTGTTACCCGGTTCGTGCGCAGATGA
AA sequence Show only first row Show all	>Potri.004G176400.2 pacid=42795225 polypeptide=Potri.004G176400.2.p locus=Potri.004G176400 ID=Potri.004G176400.2.v4.1 annot-version=v4.1 MADLLHKPLLDIEEQPRTSKKTPRVASLDVFRGLCVFLMMLVDYGGAIVPIIAHSPWNGLHLADFVMPFFLFTAGVSLALVYKRVPNRIEATRKAVLRAV ELFLLGVILQGGYFHGINSLTYGVDMKRIRWLGILQRISIGYIFAALCEIWLSCRSRRDVSFLKSYYWHWGAAFSLSAIYWGLLYGLYVPDWQFEMSNAT SSVFPTNHSYVYMVKCSVRGDLGPACNSAGMIDRYVLGIDHLYKKPVYRNLKECNMSTNGQVPESAPSWCHAPFDPEGVLSSITAAVACIIGLQYGHSLA HLQDHKQRMQNWILFSLSLLLVGLLLAVVGDPVNKSLYTFGYMLITCASAGITYSAIYLLVDVYGYRCLTFALEWMGKHSLSIFVLITSNLAVIAIQGFY WKAPENNLIQWIVTRFVRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47900			Protein of unknown function (D...		Potri.004G176400 [exp]	0	1
					Potri.017G149301 [exp]	5.19	0.8398
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.008G082301 [exp]	10.48	0.8258
AT5G38260			Protein kinase superfamily pro...		Potri.007G125200 [exp]	17.02	0.8198
					Potri.015G073051 [exp]	21.26	0.8200
AT5G66430			S-adenosyl-L-methionine-depend...		Potri.014G168166 [exp]	26.73	0.7931
AT5G23750			Remorin family protein (.1.2)		Potri.015G143600 [exp]	28.14	0.7930
AT4G05030			Copper transport protein famil...		Potri.006G002000 [exp]	28.74	0.8148
AT1G77460			Armadillo/beta-catenin-like re...		Potri.002G081101 [exp]	29.49	0.7972
AT3G49800			BSD domain-containing protein ...		Potri.007G006400 [exp]	32.24	0.7488
					Potri.004G012000 [exp]	34.17	0.8122

Compare expression of checked genes

Potri.004G176400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.