Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20200 681 / 0 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) AT1G75990 677 / 0 PAM domain (PCI/PINT associated module) protein (.1) AT5G14250 50 / 2e-06 CSN3, FUS11, COP13 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G136900 [exp] 767 / 0 AT1G20200 676 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Potri.002G017700 [exp] 513 / 1e-179 AT1G20200 554 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Potri.002G017800 [exp] 423 / 1e-144 AT1G75990 475 / 5e-165 PAM domain (PCI/PINT associated module) protein (.1) Potri.001G334200 [exp] 61 / 6e-10 AT5G14250 507 / 1e-179 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Potri.017G066300 [exp] 53 / 3e-07 AT5G14250 522 / 0.0 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034469 [exp] 739 / 0 AT1G20200 798 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10027832 [exp] 706 / 0 AT1G20200 756 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10005061 [exp] 702 / 0 AT1G20200 756 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10025072 [exp] 306 / 5e-100 AT1G75990 338 / 3e-112 PAM domain (PCI/PINT associated module) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01399 [poplar] [flax] PCI PCI domain CL0123 [poplar] [flax] PF08375 [poplar] [flax] Rpn3_C Proteasome regulatory subunit C-terminal
Representative CDS sequence Show only first row Show all	>Potri.004G176600.1 pacid=42795817 polypeptide=Potri.004G176600.1.p locus=Potri.004G176600 ID=Potri.004G176600.1.v4.1 annot-version=v4.1 ATGACTCAAGACGTCGAGATGAAAGAGCAGCAGCAGCAACCCTCTAATTCCACCACATCATCCTCTCCTTCCACTCTCCACCATTTGAAGGAGATTGCGT CGTTAATTGAGACTGGAGCGTATGCGAAGGAAGCGAGGAGGATTGTGAGAGCTGTGAGACTAACTATGACTCTGAGGAGAAAGTTGAAAGCTTCTGTGCT CTCTGCTTTTCTTAATTTTGCTCTTTCGGCGGGATCCGAGCCGTTTAATCGGTTAATTTCCTATCTTCCTAAGGAAGATGCGCATGAAATGGAGGTTGAT TCTGTGACATCTGTGACTCAAGCTCCTGCAAAATATCCCTTACCGGAACTGGAGATATATTGCTACCTGTTGGTGTTGATATTTCTGATTGATCAGAAGA AATATAATGAGGCTAAAACTTGTTCATCAGCTAGCATTGCTCGCTTGAAGAATCTAAATAGGAGGACTGTTGATGTTCTGGCATCAAGGCTGTATTCTTA CTACTCACTTAGCTATGAACTCACTGGTGATCTTGCTGAAATCAGAGGTAACCTCCTTGCTCTTCACCGGGTTGCAACATTGCGCCATGATGAGCTGGGC CAGGAAACGCTTCTCAACCTACTGCTCCGAAATTACCTCCATTACAATTTATATGATCAGGCAGAGAAGTTGAGGTCAAAGGCCCCGCGATTTGAGGCTC ATTCAAATCAGCAGTTCTGTCGGTATCTCTTCTACTTGGGAAAGATTAGGACAATTCAGTTGGAGTATACTGATGCAAAAGAGTCTCTCCTTCAAGCTGC ACGTAAAGCCCCTGCCGCAGCCCTTGGTTTTCGAGTTCTATGCAACAAGTGGGCAGTTATTGTCAGATTGCTGCTAGGAGAAATCCCTGAGAGGACTGTT TTTATGCAGAAAGGCATGGAAAATGCTTTGAGGCCATACTTTGAGCTCACAAATGCTGTGCGAATAGGGGACTTGGAGCTCTTTAAGTCCATCGCTGAGA AGTTCTCATCCACTTTTAACGCAGACAGGACCCTCAACTTAATTGTTAGACTGCGGCACAATGTTATAAGGACTGGACTTCGCAACATCAGTATCTCTTA TTCTCGTATTTCACTGGCTGATGTAGCCAAGAAGTTGAGGTTGGACTCTGCAAATCCTGTTGCAGAGGCTGAGAGCATCGTGGCCAAGGCAATACGAGAT GGTGCTATTGATGCTACATTGGATCATGCCAATGGATGGATGGTATCTAAGGAAACAGGGGACATATATTCCACAAATGAACCTCAAATTGCATTTAACT CTAGGATTGCCTTCTGCCTTAACATGCATAATGAGGCAGTACGTGCCCTTAGGTTTCCACCGAATTCCCACAAGGAGAAAGAAAGTGCTGAGAAAAGGAG AGAGAGGCAACAACAAGAGCAAGAGCTTGCGAAGCACATAGCTGAGGAGGACGATGATGAGTTTTGA
AA sequence Show only first row Show all	>Potri.004G176600.1 pacid=42795817 polypeptide=Potri.004G176600.1.p locus=Potri.004G176600 ID=Potri.004G176600.1.v4.1 annot-version=v4.1 MTQDVEMKEQQQQPSNSTTSSSPSTLHHLKEIASLIETGAYAKEARRIVRAVRLTMTLRRKLKASVLSAFLNFALSAGSEPFNRLISYLPKEDAHEMEVD SVTSVTQAPAKYPLPELEIYCYLLVLIFLIDQKKYNEAKTCSSASIARLKNLNRRTVDVLASRLYSYYSLSYELTGDLAEIRGNLLALHRVATLRHDELG QETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPAAALGFRVLCNKWAVIVRLLLGEIPERTV FMQKGMENALRPYFELTNAVRIGDLELFKSIAEKFSSTFNADRTLNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVAEAESIVAKAIRD GAIDATLDHANGWMVSKETGDIYSTNEPQIAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Potri.004G176600 [exp]	0	1
AT3G04830			Protein prenylyltransferase su...		Potri.005G051300 [exp]	1.00	0.8800
AT1G45000			AAA-type ATPase family protein...		Potri.002G031400 [exp]	1.73	0.8669	RPT4.2
AT4G25030			unknown protein		Potri.010G219900 [exp]	3.87	0.8151
AT1G61790			Oligosaccharyltransferase comp...		Potri.011G025700 [exp]	5.09	0.8235
AT2G20420			ATP citrate lyase (ACL) family...		Potri.014G195700 [exp]	6.32	0.8703
AT3G26340			N-terminal nucleophile aminohy...		Potri.010G058100 [exp]	6.70	0.8536	PBE1.1
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Potri.001G456800 [exp]	7.48	0.8454
AT3G20920			translocation protein-related ...		Potri.009G052800 [exp]	9.16	0.7478
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Potri.001G383500 [exp]	9.79	0.8468
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Potri.005G228900 [exp]	10.39	0.7853	RER1.4

Compare expression of checked genes

Potri.004G176600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.