Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16940 539 / 0 Splicing factor, CC1-like (.1.2.3) AT5G09880 467 / 4e-159 Splicing factor, CC1-like (.1) AT1G48920 74 / 1e-13 ATNUC-L1, PARL1 PARALLEL 1, nucleolin like 1 (.1) AT5G54900 73 / 1e-13 ATRBP45A RNA-binding protein 45A (.1) AT4G34110 69 / 4e-12 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT4G27000 68 / 6e-12 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G49600 66 / 2e-11 ATRBP47A RNA-binding protein 47A (.1) AT3G18610 67 / 3e-11 ATNUC-L2, PARLL1, ATRANGAP1 PARALLEL1-LIKE 1, nucleolin like 2 (.1) AT4G19610 67 / 3e-11 nucleotide binding;nucleic acid binding;RNA binding (.1) AT3G14100 66 / 4e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G137200 [exp] 719 / 0 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.007G009800 [exp] 489 / 3e-166 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.005G148100 [exp] 483 / 6e-165 AT5G09880 553 / 0.0 Splicing factor, CC1-like (.1) Potri.003G149600 [exp] 78 / 9e-15 AT4G19610 646 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Potri.011G138400 [exp] 72 / 3e-13 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G071100 [exp] 71 / 1e-12 AT1G48920 243 / 1e-72 PARALLEL 1, nucleolin like 1 (.1) Potri.001G423400 [exp] 70 / 2e-12 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G361300 [exp] 69 / 5e-12 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G304000 [exp] 69 / 6e-12 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034466 [exp] 571 / 0 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10025075 [exp] 550 / 0 AT2G16940 565 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10027830 [exp] 501 / 3e-172 AT2G16940 553 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10005059 [exp] 478 / 9e-163 AT2G16940 534 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10002093 [exp] 472 / 7e-161 AT5G09880 600 / 0.0 Splicing factor, CC1-like (.1) Lus10000826 [exp] 461 / 1e-156 AT5G09880 589 / 0.0 Splicing factor, CC1-like (.1) Lus10029372 [exp] 77 / 7e-15 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10016174 [exp] 76 / 1e-14 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10026514 [exp] 72 / 2e-13 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10010042 [exp] 72 / 6e-13 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] RRM PF13893 [poplar] [flax] RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF15519 [poplar] [flax] RBM39linker linker between RRM2 and RRM3 domains in RBM39 protein
Representative CDS sequence Show only first row Show all	>Potri.004G177000.2 pacid=42795737 polypeptide=Potri.004G177000.2.p locus=Potri.004G177000 ID=Potri.004G177000.2.v4.1 annot-version=v4.1 ATGGAGTTTGATGAGTACGACTACTTAGAGAAAACAGTTGAAAATCTGGAACCGCCAAAGGCAAAGGAAACTGCTAATGGCGGGGATGATAAGGTGAAAT CTAGGGAAAAGGATCGTTCACGGAGTTCGAAGCATAGGAGTGATGAGAAGGATCTTGGGAATGATGATGAACGAAGTCGTTCGAAGCGATCGAGATCTGG AGATGAGTCCAGGGATCGTGAACGGAGTAAAGAAAGGAGTTCATCCCGTCATCGGTCACAGTCTAGAGATGGAGAGAGGGATCGGCACAAGAGTAGCAGG GAACATCGAGACAGGGACAGAGGTCGGGATAGAGATAGGGAGGAGATAAATGGGAAAGAAAGGGATCGTGATCGTGATAGGAGGGAACGTGACCGTGATG GTGAAAAGGAGAGGGAGAGAGATAAGAAGGAAATAGAGCGGTCACGCCGAAGCAGGAGTAGATCGGAAAGGCGTAGAAGTGATCAAGATGAAAAGGATAG AGAGAGGAGCAGGGACAGGGAGCTTAGAGAAAAGGACAGGGAGCTTAGAGAAAAGGACAGGGAGCTTAGAGAAAAGGAAAGGGAGAGGGAGAGGGAGCCA AAGGAACGAGACAGAGAAAGCAGATATGCTAGAGCATTCAGATGGTCTTTCTGGCAATTGAGCCAGGCACAGGAACTCAGAAGATATAAAGAAAGAAAGG AAGAAGCAGTGGAGCCTGAGGTTGATCCTGAACGTGATCAGAGGACAGTATTTGCCTATCAGATATCTTTAAAGGCGGATGAAAGAGATGTCTATGAATT TTTCTCTAGGGCTGGCAAGGTGCGAGATGTACGTCTCATCATGGATCGCAATTCAAGACGTTCAAAAGGAGTTGGGTATATCGAGTTCTATGATGCGATG TCAGTGCCTATGGCGATAGCACTCTCTGGACAGCTCCTCCTTGGTCAACCAGTGATGGTGAAACCTTCTGAAGCTGAAAAGAATCTTGTTCAGTCAACTA CTGCTGTGACATCAGGTGGACTTACAGGCCCCTACTCAGGAGGGGCTAGAAGGTTGTATGTTGGCAACCTGCACTTCAACATTACAGAAGATCAACTTCG TCAGGTATTTGAACCATTTGGCGCTGTGGAGTTGGTGCAATTGCCTCATGATGAAAGCGGGCATTGCAAAGGTTTTGGTTTTGTCCAGTTTGCACGTCTT GAAGATGCCAGAAATGCATTAAACTTGAATGGACAAGTTGAGATTGCAGGCAGGCCAATCAAGGTTTCAGCTGTCACTGATCAAACTGGAACACAAGATG GCGGGACAAATGTTGGTGATTTTGATGATGATGAAGGTGGTGGCTTGGCCTTGAATGCACGTTCTCGGGCACTTTTGATGCAGAAATTAGATCGTACTGG CACTGCCTCAAGTATTGCTGGTTCACTAGGCACCCCTACTCTACCAACAGCACCGATCCTTGGGGCCACACCTGTAGTGTCTCCTGCTGTTGCTCCTCTT TTATCAGGTTCTGTTCCAGCTATACCTGGACTTCCAGTTCCAGGCCTTCAACTTCCGGCCACTGCAATTCCAACCATGGATACAATTGGAGTCCCAAGTG ATTGTTTATTTTTGAAAAACATGTTTGATCCAAAAACAGAGACCGAACCAGATTTTGATTTGGATATTAAAGAAGATGTCCAAGAGGAATGCTCAAGGTT TGGAAATGTGAAGCATATTTATGTCGACAAGAACAGTGCCGGTTTTGTTTACATGCGATTTGAGAATATGCAAGCTGCAATAAATGCACAGCACGCTCTC CATGGAAGATGGTTTGCCGGGAAGTTGATCACTGCAACTTTCATGGTGCCCCAGACCTACGAGGCTAAGTTTCCTGACAGCAGATAG
AA sequence Show only first row Show all	>Potri.004G177000.2 pacid=42795737 polypeptide=Potri.004G177000.2.p locus=Potri.004G177000 ID=Potri.004G177000.2.v4.1 annot-version=v4.1 MEFDEYDYLEKTVENLEPPKAKETANGGDDKVKSREKDRSRSSKHRSDEKDLGNDDERSRSKRSRSGDESRDRERSKERSSSRHRSQSRDGERDRHKSSR EHRDRDRGRDRDREEINGKERDRDRDRRERDRDGEKERERDKKEIERSRRSRSRSERRRSDQDEKDRERSRDRELREKDRELREKDRELREKEREREREP KERDRESRYARAFRWSFWQLSQAQELRRYKERKEEAVEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAM SVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSTTAVTSGGLTGPYSGGARRLYVGNLHFNITEDQLRQVFEPFGAVELVQLPHDESGHCKGFGFVQFARL EDARNALNLNGQVEIAGRPIKVSAVTDQTGTQDGGTNVGDFDDDEGGGLALNARSRALLMQKLDRTGTASSIAGSLGTPTLPTAPILGATPVVSPAVAPL LSGSVPAIPGLPVPGLQLPATAIPTMDTIGVPSDCLFLKNMFDPKTETEPDFDLDIKEDVQEECSRFGNVKHIYVDKNSAGFVYMRFENMQAAINAQHAL HGRWFAGKLITATFMVPQTYEAKFPDSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16940			Splicing factor, CC1-like (.1....		Potri.004G177000 [exp]	0	1
					Potri.003G148601 [exp]	3.16	0.9295
AT5G67320		HOS15	high expression of osmotically...		Potri.007G050100 [exp]	3.46	0.8827
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.007G119300 [exp]	5.74	0.9182	SDG904
AT2G16485			nucleic acid binding;zinc ion ...		Potri.009G123800 [exp]	6.00	0.9132
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.009G047800 [exp]	6.00	0.8991
AT2G16880			Pentatricopeptide repeat (PPR)...		Potri.010G217600 [exp]	6.32	0.8317
AT4G31880			unknown protein		Potri.006G186700 [exp]	6.70	0.8875
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.009G003900 [exp]	7.07	0.8871
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.017G041100 [exp]	8.66	0.9086
					Potri.008G016200 [exp]	9.79	0.8887

Compare expression of checked genes

Potri.004G177000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.