Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21740 224 / 7e-62 Protein of unknown function (DUF630 and DUF632) (.1) AT4G30130 219 / 3e-61 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 218 / 3e-61 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 218 / 2e-60 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 212 / 2e-58 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT2G27090 210 / 4e-58 Protein of unknown function (DUF630 and DUF632) (.1) AT1G02110 201 / 5e-55 Protein of unknown function (DUF630 and DUF632) (.1) AT2G19090 201 / 2e-54 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 198 / 2e-53 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT3G60320 187 / 6e-50 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G137500 [exp] 1097 / 0 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G108400 [exp] 724 / 0 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G090300 [exp] 226 / 9e-64 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G179100 [exp] 228 / 2e-63 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G082000 [exp] 219 / 1e-60 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G077700 [exp] 218 / 1e-60 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G077000 [exp] 215 / 2e-59 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G249400 [exp] 204 / 1e-56 AT1G20530 359 / 9e-116 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G159000 [exp] 202 / 3e-55 AT2G27090 746 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024007 [exp] 841 / 0 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025077 [exp] 839 / 0 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10029683 [exp] 226 / 2e-63 AT1G21740 696 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10042722 [exp] 221 / 3e-62 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 220 / 7e-62 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 214 / 2e-59 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10015534 [exp] 213 / 2e-59 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10023949 [exp] 207 / 6e-58 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10041884 [exp] 202 / 2e-57 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10028431 [exp] 204 / 2e-56 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [poplar] [flax] DUF632 Protein of unknown function (DUF632) PF04783 [poplar] [flax] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Potri.004G177200.1 pacid=42793970 polypeptide=Potri.004G177200.1.p locus=Potri.004G177200 ID=Potri.004G177200.1.v4.1 annot-version=v4.1 ATGGGATGTGTTGCTTCTAAGCTAGAAGAAGAAGAGGTTGTATCTATCTGTAGAGAGAGGAAACGCCAGTTGAAGCTTGCTGTAGAGAGAAGACATGCAC TAGCAGAAGCACATTGTAGATATTGTCAATCTCTCTATGCAGTAGCAGCAGGCATAAAGCTTTTCGTAGCTAGACATTCTTCTCCAACTTCACCATTTCT CATTACTTTCCCTTCTTGCCCATCTCCACCATCAAATGAGCAGCAAAATGTTATAACAAACCCAATGTTTCTTCAACAAAGACCATCTGAGTCAACAACT CATGAAGAAGCCATCGCTTGCGAGTCTTGTGGTTCTTCAACATCTTCTTCTGATTCTAGTGATCATGAGGAAGAGAGTAATAAAGAAGAAGTCATGCAGA GAGAGGAGCGTGGTCAACAAAGTTTTGGGTACTATTATATGCAAATGCCGCTGCCACCACAATCACCACAGAGGGATTTTGGGTGGGATTTCTTTAACCC TTTTGACACTGCCATGAGACCAGAGATTATGAGTGCTTACACGAGAACTTCTGATGATGATTTGAGGTTTGTGAGAGAACAGGAAGGGATTCCTGACCTA GAAGAAGAAGGAGATAGAGAAGAAGAGGAAGCGAAAAATGTGGTGTTTGTTGAAGAGAAAGGAAAAGGAGATCTTGGGGAGAGTGGGGGTAATGTGGTTA AGGTAGTTGATGGAGGTGGTGATGACAGCCAAGAAAAGCAAAATGGGCTCACAGTAATTGATAAGCCAGAGAGAGGGAGGGAGTTATTGGAGGCATTGAA GGATATCGAGGACCATTTCATTAGGGCTTATGATTCTGGCAAGGATGTTTCAAGGATGCTTGAGGCTAATAAAGTTTTTTTGCATTCTGGCTTGGAGGAA ATTAAAGAGAACTCAACAAAACTAATCCAAGCCATTGCATGGCATCGGTCGACTTCATCAAAGCCATCATCATGTAAGAGCCTTGTAGCATCCAGTTTGA AAGGTTCTTCTACCTGGACAGAATATAAAAATGATCTCTTTGATGATTATGGAGGAATGGATTCAGGAAGCCATTCACTTACACTTGGAAGGTTGTATGC TTGGGAAAAGAAGCTCTATGAAGAGGTTAAGGCAGGGGACAGCACACGAAAAATATATGAAAAAAAGTGTTCACGAATGAGAAACCAGGATGTCAGGGGA GATGATGAACTCACCATAGATAAGACCAGAGCAGCAGTAAAAGATTTATATGCTAGGATCTTGGTTGCAATTCGAAGTGCTGAATCAATATCTAAGAGAA TTGAGAAACTAAGAGATGAAGAACTGCAGCCTCAAATCGTAGAACTGTTAAAAGGCCTAACGCTCACCTGGAAGATTATGTTGGAATCCCATGAAACCCA GAACAAAATTCTACTTGAAGTAAAAACTTTCGCTAGCCCCACATATGGAAAATTCTGCAATGACTCACACCGGCTTGCGACACTTCAGCTTGAGGCTGAG CTTCTGAATTGGCGTGCATGCTTTGAAGAGTATGTTGCAGCACAAAAGGCATACGTGGAAGCTCTCCATAGTTGGTTAAGCAAGTTCGTAGTCCCTGAGG TTGAATTCTACTCCCGGGGCAGGAGTTCAGCAGCGCCGTATCGAACATTTGGTCCCCCATTACTTGTGATCTGCCATGATTGGTTATCTTCTGTGGATAA GTTACCAGATAAGGCAGTATCGTTTGCGTTGAAAAGCTTCTCAAAAGATGTAAGGGCTTTGTGGGCTCAGCAAGGGGAGGAACAACAACAGAAGAGGAAA GTTGACAGTCTAGCGAAAGAACTTGACAGAAGAAACCTGTCATTCCAGAAGGTAGAGAACAGGTTTCACGAATCCAAACTTCTAGAGTATAAACCTGAGC AAGAGACAGAACACCAGCATGAGCACTTGACTGAGAAGAAAGATCAGCTGGACATGTTTAGGAAGAAGCTGGATATAGAAAAGGAAAAACACCACAACTA CGTGCAAGAAACACAAAGGATCACGCTGAGTGGATTTCAGACAGGATTTTCAACGGTTTTTGAGTCCTTAACGGAGTTCTCTAAGGCTTCTATGAAGATG TACAATGATCTTGTGAATCATAGTGAAAATAATGCCGGTAAAATGGAGAAGCAATCTTTTATAGGGGACTCCCTGGCTGAAGAAAATGGCAGCAGGTGA
AA sequence Show only first row Show all	>Potri.004G177200.1 pacid=42793970 polypeptide=Potri.004G177200.1.p locus=Potri.004G177200 ID=Potri.004G177200.1.v4.1 annot-version=v4.1 MGCVASKLEEEEVVSICRERKRQLKLAVERRHALAEAHCRYCQSLYAVAAGIKLFVARHSSPTSPFLITFPSCPSPPSNEQQNVITNPMFLQQRPSESTT HEEAIACESCGSSTSSSDSSDHEEESNKEEVMQREERGQQSFGYYYMQMPLPPQSPQRDFGWDFFNPFDTAMRPEIMSAYTRTSDDDLRFVREQEGIPDL EEEGDREEEEAKNVVFVEEKGKGDLGESGGNVVKVVDGGGDDSQEKQNGLTVIDKPERGRELLEALKDIEDHFIRAYDSGKDVSRMLEANKVFLHSGLEE IKENSTKLIQAIAWHRSTSSKPSSCKSLVASSLKGSSTWTEYKNDLFDDYGGMDSGSHSLTLGRLYAWEKKLYEEVKAGDSTRKIYEKKCSRMRNQDVRG DDELTIDKTRAAVKDLYARILVAIRSAESISKRIEKLRDEELQPQIVELLKGLTLTWKIMLESHETQNKILLEVKTFASPTYGKFCNDSHRLATLQLEAE LLNWRACFEEYVAAQKAYVEALHSWLSKFVVPEVEFYSRGRSSAAPYRTFGPPLLVICHDWLSSVDKLPDKAVSFALKSFSKDVRALWAQQGEEQQQKRK VDSLAKELDRRNLSFQKVENRFHESKLLEYKPEQETEHQHEHLTEKKDQLDMFRKKLDIEKEKHHNYVQETQRITLSGFQTGFSTVFESLTEFSKASMKM YNDLVNHSENNAGKMEKQSFIGDSLAEENGSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21740			Protein of unknown function (D...		Potri.004G177200 [exp]	0	1
AT2G44930			Plant protein of unknown funct...		Potri.014G054100 [exp]	1.41	0.9136
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.014G012800 [exp]	1.41	0.9141
AT2G23440			unknown protein		Potri.007G041400 [exp]	1.73	0.9122
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Potri.006G230700 [exp]	4.00	0.9038
AT5G25260			SPFH/Band 7/PHB domain-contain...		Potri.006G258900 [exp]	6.48	0.8791
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Potri.010G173300 [exp]	7.93	0.8724	ZIP1.1
AT3G62270			HCO3- transporter family (.1)		Potri.015G077600 [exp]	7.93	0.8757
AT4G19380			Long-chain fatty alcohol dehyd...		Potri.004G234900 [exp]	10.00	0.8700
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.004G030600 [exp]	10.67	0.8527
					Potri.019G017150 [exp]	11.18	0.8436

Compare expression of checked genes

Potri.004G177200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.