Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20920 306 / 2e-104 Protein of unknown function (DUF3353) (.1) AT3G51140 47 / 4e-06 Protein of unknown function (DUF3353) (.1) AT5G23040 46 / 1e-05 CDF1 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) AT1G08640 43 / 0.0001 CJD1 Chloroplast J-like domain 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G137600 [exp] 483 / 2e-174 AT2G20920 301 / 2e-102 Protein of unknown function (DUF3353) (.1) Potri.013G046200 [exp] 49 / 1e-06 AT1G08640 358 / 5e-125 Chloroplast J-like domain 1 (.1) Potri.012G057700 [exp] 47 / 5e-06 AT5G23040 316 / 3e-109 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Potri.019G018300 [exp] 43 / 0.0002 AT1G08640 342 / 2e-118 Chloroplast J-like domain 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024004 [exp] 335 / 7e-116 AT2G20920 332 / 8e-115 Protein of unknown function (DUF3353) (.1) Lus10005055 [exp] 326 / 2e-112 AT2G20920 314 / 1e-107 Protein of unknown function (DUF3353) (.1) Lus10005056 [exp] 326 / 2e-112 AT2G20920 314 / 1e-107 Protein of unknown function (DUF3353) (.1) Lus10025079 [exp] 323 / 4e-111 AT2G20920 333 / 5e-115 Protein of unknown function (DUF3353) (.1) Lus10027826 [exp] 319 / 2e-109 AT2G20920 309 / 7e-106 Protein of unknown function (DUF3353) (.1) Lus10038965 [exp] 52 / 2e-07 AT5G23040 361 / 3e-127 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10009608 [exp] 48 / 2e-06 AT5G23040 333 / 3e-117 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10041816 [exp] 47 / 1e-05 AT3G51140 328 / 3e-112 Protein of unknown function (DUF3353) (.1) Lus10027257 [exp] 47 / 1e-05 AT5G23050 1044 / 0.0 acyl-activating enzyme 17 (.1) Lus10000868 [exp] 46 / 1e-05 AT5G23040 359 / 3e-126 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11833 [poplar] [flax] CPP1-like Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Representative CDS sequence Show only first row Show all	>Potri.004G177300.2 pacid=42796497 polypeptide=Potri.004G177300.2.p locus=Potri.004G177300 ID=Potri.004G177300.2.v4.1 annot-version=v4.1 ATGGCTGCCACTCTCTCAGTCCGGTCCAACCACCTCTCTCCACCTGGTTCACGTCTCTCCCGACTACCGGTTCACAATCCCTTAAACGTAAATCAAATAA AATCATCATTAAAAAAAGACCCTGTTTTCTGGAGGGGAGTAATTGTGCAACCCAGGCGTATTTTAGTGAGAGCAGGCTCCAGAGCCGATGATTCGTCGGC GCCGTTTGAGATGTCAGTGGAGAGCGCACTCAAACTTCTTGGTGTCTCAGACGGCGCGTCATTCGATGAAATACTTCGCGCCAAAAATTCCATTGTCGCT ATATGTAAAGATGACCAGGAAGCCATTGCACAGGTTGAAGCCGCATATGATATGTTGCTCATGCGGAGCTTAATTCAGCGCCGGGCAGGAAAAGTCGTGA GCAGTAACATTCGTTATGCTGATGTTAAACCTGTAAGTGGCCCTGGGATGGGACCAATGCCACAGTGGGTGCAGACTACAATTAAGAAAACCCCTGTTTC AGTGGAAACACCATCAACTGGAGAGTTGGGCTTACAAGCAGGAGTGTATGGAGCTTTGATGGTTTTAACTTATGTTAATGGCACTTCCATGCCTTCTGTG GCACCTTATGCGGGGGCTGATGTTCCTGGCCTGATATTAGCTACAAGCTTTGGTGCTTCCTTGTACTTCATGACCAAAAAGAATGTGAAGTTAGGGAAAG CTACTATAATAACTATAGGGGGGCTCGTGGCTGGAGCAGTGGTGGGGTCAGCAGTTGAGAATTGGTTGCAGGTTGACATTGTCCCGTTTCTTGGACTACA CTCCCCAGCAGCTGTAGTTAGTGAATTCATACTCTTCTCTCAATTCTTGGTCTCTCTGTATCTAAGGTAG
AA sequence Show only first row Show all	>Potri.004G177300.2 pacid=42796497 polypeptide=Potri.004G177300.2.p locus=Potri.004G177300 ID=Potri.004G177300.2.v4.1 annot-version=v4.1 MAATLSVRSNHLSPPGSRLSRLPVHNPLNVNQIKSSLKKDPVFWRGVIVQPRRILVRAGSRADDSSAPFEMSVESALKLLGVSDGASFDEILRAKNSIVA ICKDDQEAIAQVEAAYDMLLMRSLIQRRAGKVVSSNIRYADVKPVSGPGMGPMPQWVQTTIKKTPVSVETPSTGELGLQAGVYGALMVLTYVNGTSMPSV APYAGADVPGLILATSFGASLYFMTKKNVKLGKATIITIGGLVAGAVVGSAVENWLQVDIVPFLGLHSPAAVVSEFILFSQFLVSLYLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20920			Protein of unknown function (D...		Potri.004G177300 [exp]	0	1
AT4G34730			ribosome-binding factor A fami...		Potri.004G164200 [exp]	1.41	0.9733
AT5G43050		NPQ6	NONPHOTOCHEMICAL QUENCHING 6, ...		Potri.012G134700 [exp]	3.46	0.9568
AT3G58140			phenylalanyl-tRNA synthetase c...		Potri.013G105200 [exp]	4.24	0.9728
AT1G32160			Protein of unknown function (D...		Potri.003G097400 [exp]	5.47	0.9625
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Potri.003G119200 [exp]	9.79	0.9655
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Potri.017G062800 [exp]	9.79	0.9721	SK1
AT5G22210			unknown protein		Potri.009G162200 [exp]	10.09	0.9424
AT5G53080			Tetratricopeptide repeat (TPR)...		Potri.015G010800 [exp]	12.00	0.9595
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Potri.005G050700 [exp]	12.12	0.9428
AT1G28150			unknown protein		Potri.004G066900 [exp]	12.24	0.9513

Compare expression of checked genes

Potri.004G177300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.