Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14210 79 / 2e-15 PDE226, PDS3 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) AT3G04870 65 / 7e-11 SPC1, PDE181, ZDS SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) AT4G16310 43 / 0.0006 LDL3 LSD1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G148700 [exp] 73 / 2e-13 AT4G14210 940 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Potri.013G037700 [exp] 66 / 3e-11 AT3G04870 953 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Potri.002G235200 [exp] 63 / 4e-10 AT4G14210 899 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Potri.005G050700 [exp] 59 / 5e-09 AT3G04870 926 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Potri.005G235400 [exp] 43 / 0.0005 AT4G16310 1192 / 0.0 LSD1-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025080 [exp] 655 / 0 AT4G14210 67 / 1e-11 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10024003 [exp] 646 / 0 AT4G14210 64 / 1e-10 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10041260 [exp] 73 / 3e-13 AT4G14210 951 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10021967 [exp] 69 / 3e-12 AT4G14210 952 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10015935 [exp] 60 / 3e-09 AT3G04870 954 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Lus10009190 [exp] 57 / 3e-08 AT3G04870 854 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Lus10033928 [exp] 43 / 0.0006 AT4G16310 1391 / 0.0 LSD1-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01593 [poplar] [flax] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.004G177400.2 pacid=42794983 polypeptide=Potri.004G177400.2.p locus=Potri.004G177400 ID=Potri.004G177400.2.v4.1 annot-version=v4.1 ATGTTATTGGGCTGTTGTAGGTTCCCTCTCACATCTTATGTGTTTGCAAACACAAGATGTAGAGATAAAAGTAGAAGTGGGCTTTCTCGCAAAGCAGCAA CTCGACAAATCCATGCCAGTAATGGAGAGTACAACAACAACAAAAAGAAGGTAGTCATTGTTGGCTCAGGCTGGGCTGGTCTTGGTGCTGCATACCACCT CTGTAACCAGGGATTTGATGTTACTGTTCTTGGAGATGGGTATGATTTTGGTGATCCTGATGATGTTGGTATCCATGGTTTTTGGTATCCCTACAAAAAC ATATTTAGCCTTGTTGACGAACTGGGCATGAAGCCCTTCACTAATTGGTTGCAGTCCGCACAATATTCAAAAGAGGGACTAGAGGTTGAATTTCCTGTTC TCCAAGATCGGCCTCAACTTCCTGCACCATTAGGAACCTTATTCTATACTCAATTCAATCGGCTCCCATTGGTGGATAGATTAACATCTGTTCCTCTAAT GGCCGCAGTAATTGACTTCGACAACACTGACATGGCTTGGAGGAAATATGATTCAGTTACTACAAGGGAGCTTCTCAAACAGTCTGGCTTCTCAGAAAGA CTTTATCAGGATGTTTTTGGGTCATTACTTCAAGTGGGTTTGTGTGCTCCGCTAGAGCAATGCAGTGCAGCTGCTGCACTTGGAATGCTGCAGTTCATGG CCATTTCACATCAGGGAGATCTCGATATCGTATGGTGTCGCGGGTCAGTCAGAGAAAGGATTTTCAATCCATGGATAGAGTTGATGAGTAGTAAAGGCTG TCAATTTGTGGACAGTAAAAAGGTGATAGATTTTTCATTCGATGAGGAAACAGGTTGCATTTCAGACGTGGTTTGTGACAATGAGACATACAAGGCAGAT GCAGTTATTTTAGCTGTTGGAATTTCCACGGTCCAGGAACTCACTAAGAATAGTGCAGCATTAAATACAAGAGAGGAGTTTCTGAAGGTTTTAAACCTGG CTGCCAGTGATTTGGTCTCCACTAAACTTTGGCTAGACAAGAAGATCAGGATTCCATTTGCAAGGAATGTTTGCTCTTCCTTTGATGATTCGTCTGGGTG GACTTTCTTTAACTTGAACGAACTTTTTGATGAGCATAGGAACAGTCCTGTAACAATTGTCCAAGCTGATTTTTATCATGGTAATGAGTTGGTACCGCTC AAAGACGAATACATAGCTACAAAAGTAATGCCTTATCTCTCCAAGTGCGTTAAGGACTTTGAGGCAGCTCGTGTTACCAATGTGGAAATTGCCAGATTTC CAAAATCCATGACACATTTCATTCCAGGTTCATACAAATATATGATGCGTGGATCTACATCTTTCCCGAACTTGTTCATGGCTGGCGATTGGATTATTTC GCGGCACGGATCATGGTCACAGGAAAAATCTTATGTGACTGGACTCGAGGGTGCCAACCGGGTGGTAGACTTTCTTGAAGAAGGAAACTATGCTAAAATA ATTCCACTAGAGGAAGATGAACCTCATATCCAAGCTCTCAGAAACCTTAATAGAAACTTTAAGGAGTTCAACTCTCAATTTCCACTGTCTGATTATTTCC TCCAGTGA
AA sequence Show only first row Show all	>Potri.004G177400.2 pacid=42794983 polypeptide=Potri.004G177400.2.p locus=Potri.004G177400 ID=Potri.004G177400.2.v4.1 annot-version=v4.1 MLLGCCRFPLTSYVFANTRCRDKSRSGLSRKAATRQIHASNGEYNNNKKKVVIVGSGWAGLGAAYHLCNQGFDVTVLGDGYDFGDPDDVGIHGFWYPYKN IFSLVDELGMKPFTNWLQSAQYSKEGLEVEFPVLQDRPQLPAPLGTLFYTQFNRLPLVDRLTSVPLMAAVIDFDNTDMAWRKYDSVTTRELLKQSGFSER LYQDVFGSLLQVGLCAPLEQCSAAAALGMLQFMAISHQGDLDIVWCRGSVRERIFNPWIELMSSKGCQFVDSKKVIDFSFDEETGCISDVVCDNETYKAD AVILAVGISTVQELTKNSAALNTREEFLKVLNLAASDLVSTKLWLDKKIRIPFARNVCSSFDDSSGWTFFNLNELFDEHRNSPVTIVQADFYHGNELVPL KDEYIATKVMPYLSKCVKDFEAARVTNVEIARFPKSMTHFIPGSYKYMMRGSTSFPNLFMAGDWIISRHGSWSQEKSYVTGLEGANRVVDFLEEGNYAKI IPLEEDEPHIQALRNLNRNFKEFNSQFPLSDYFLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Potri.004G177400 [exp]	0	1
AT5G08280		HEMC	hydroxymethylbilane synthase (...		Potri.005G091600 [exp]	3.60	0.9173
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.014G152000 [exp]	4.24	0.9145
AT4G34090			unknown protein		Potri.009G099600 [exp]	4.69	0.9166
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G036600 [exp]	5.00	0.9098
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Potri.002G234400 [exp]	7.74	0.9077
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Potri.006G140500 [exp]	12.96	0.8996
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.001G351400 [exp]	14.96	0.9128
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.002G230200 [exp]	16.49	0.8754
AT5G09820			Plastid-lipid associated prote...		Potri.001G309300 [exp]	18.16	0.8937
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.002G154700 [exp]	23.21	0.8889	Pt-ANL2.1

Compare expression of checked genes

Potri.004G177400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.