Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16950 1280 / 0 ATTRN1 transportin 1 (.1.2) AT2G16960 419 / 1e-136 ARM repeat superfamily protein (.1.2) AT3G08943 74 / 5e-13 ARM repeat superfamily protein (.1) AT3G08947 72 / 2e-12 ARM repeat superfamily protein (.1) AT5G53480 54 / 4e-07 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G138200 [exp] 1553 / 0 AT2G16950 1316 / 0.0 transportin 1 (.1.2) Potri.006G103300 [exp] 73 / 6e-13 AT3G08943 1294 / 0.0 ARM repeat superfamily protein (.1) Potri.015G010400 [exp] 71 / 2e-12 AT5G53480 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.012G017500 [exp] 64 / 5e-10 AT5G53480 1531 / 0.0 ARM repeat superfamily protein (.1) Potri.016G123600 [exp] 63 / 1e-09 AT3G08943 1288 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025083 [exp] 1426 / 0 AT2G16950 1392 / 0.0 transportin 1 (.1.2) Lus10023999 [exp] 1413 / 0 AT2G16950 1380 / 0.0 transportin 1 (.1.2) Lus10041453 [exp] 63 / 1e-09 AT5G53480 1334 / 0.0 ARM repeat superfamily protein (.1) Lus10034318 [exp] 62 / 2e-09 AT5G53480 1332 / 0.0 ARM repeat superfamily protein (.1) Lus10008864 [exp] 60 / 1e-08 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10008863 [exp] 59 / 2e-08 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10023246 [exp] 58 / 4e-08 AT5G53480 1449 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02985 [poplar] [flax] HEAT HEAT repeat CL0020 [poplar] [flax] TPR PF03810 [poplar] [flax] IBN_N Importin-beta N-terminal domain CL0020 [poplar] [flax] TPR PF13513 [poplar] [flax] HEAT_EZ HEAT-like repeat
Representative CDS sequence Show only first row Show all	>Potri.004G177700.1 pacid=42796758 polypeptide=Potri.004G177700.1.p locus=Potri.004G177700 ID=Potri.004G177700.1.v4.1 annot-version=v4.1 ATGGAGGCACCAACGGCGGCGGCGTGGCAGCCACAGGAAGAAGGGTTCAAGGAGATCTGTGGATTATTAGAGCATCAAATTTCACCAACTTCAACCGCTG ATAAGTCTCAGATTTGGAAGCAGTTACAACACATCTCTCAATTCCCCGATTTTAATAATTACCTCGCTTTCATTCTCTCTCGCGCCGAGGGGAAATCGGT GGAGATAAGGCAGGCGGCAGGTTTATTGTTGAAAAATAACCTAAGAAATGCGTATAAAACTATGACGCCTGACAATCAACAATATATAAAATCGGAGTTG TTGCCGTGTTTAGGAGCAGCGGATAGGCATATAAGGTCGACGGCAGGGACGATTATTAGTGTTATTGTTCAACTAGGAGGGATTTTGGGATGGCCGGAGT TGTTGCAAGCTGTCATTACTTGTTTGGATAGCAATGATCTTAATCACATGGAAGGCGCTATGGATGCTCTGTCCAAGATTTGTGAGGATATTCCGCAAGT TTTGGATTCGGACGTGCCTGGGTTGTCTGAACGACCTATCAAGATTTTTCTTCCTCGATTATATCAGTTTTTCCAGTCACCTCATCCTTCACTGAGAAAG CTGGCATTGGGTTCTGTAAATCAATACATTATGTTAATGCCTGCTGCTCTATATGCATCCATGAATCAGTACCTTCAAGGTTTGTTTGCTCTTGCTAATG ACCAGGCTGCAGAAGTGCGAAAATTGGTTTGTGCAGCTTTTGTACAGCTAATTGAGGTCCGACCATCTTTCTTGGAGCCACATTTGAGGAGTGTAGCTGA ATATATCTTGCAAGTCAACAAGGATGGTGATGATGAAGTGGCTCTTGAAGCCTGTGAATTCTGGTCTGCATACTGTGATGCTCAGTTACCTACTGAGACC TTAAGAGAATTCTTGCCACGCCTGATTCCGGTTTTGCTGTCAAATATGGCTTATGCTGATGATGATGAGTCACTCGCTGAGGCTGAGGAAGATGAGTCTC TCCCAGACCGGGATCAGGATCTGAAACCTCGTTTTCATACATCACGATTTCATGGATCAGATAGCATGGAAGATGATGATGATGACATAGTGAATGTGTG GAATTTAAGAAAATGCAGTGCAGCAGCTCTTGATATTCTCTCAAATGTGTTTGGAGACGAGATTCTTCCAACGTTGATGCCTGTTGTTCAGGCTAAGCTG TCTGCTAGTGGTGATGAATCCTGGAAAGACAGAGAAGCAGCTGTTTTGGCTCTTGGTGCTGTCGCTGAGGGTTGCATAAATGGTCTTTATCCTAATTTAT CCCAGATGGTGGGTTTTCTTATTCCTCTATTAGATGATAAATTTCCCCTCATACGGAGCATTTCCTGTTGGACGATTTCGCGATTCAGCAAATACGTTGT TCAGGAAAGTGGCCACCAGAAAGGCTACGAACAATTTGATGAAGTTCTTATGGGTCTTCTACGAAGAATATTGGATACTAACAAGCGTGTGCAAGAGGCT GCTTGCTCAGCTCTTGCAACACTAGAAGAGGAGGCTGCTGAAGAGTTGGCACCACGGTTAGAAATTATTTTACAGCACCTTGTGTGTGCTTTTGGGAAAT ATCAGAGACGGAACCTTAGAATTGTATATGATGCTATTGGAACTCTAGCAGATGCTGTTGGAGCAGAACTGAATCAGCCTGCTTATCTTGAAATTTTGAT GCCACCATTAATTGCAAAGTGGCAGCAGCTTTCAAACTCAGACAAAGATCTCTTTCCCCTGCTGGAGTGCTTTACATCCTTAGCAAAGGCATTGGGTGCA GGATTCTCTCAATTTGCAGAACCTGTGTTTCAGAGGTGCACAGCCATAATCCATAGCCAACAGTTAGCAAAGGCTGATCCTGTTGCAGCTGGGTTTCTGT ATGATAAAGAATTCATCGTGTGCTCTCTAGATCTTCTCTCTGGACTTGCCGAGGGTCTTGGTAGTGGGATAGAAAGTTTGGTTTCACAAAGTAATTTGAG GGACCTCCTTCTGCAATGTTGCATGGATGATGCTTATGATGTTCGACAAAGCGCTTTTGCACTCCTTGGGGACCTTGCAAGAGTATGTACTGTTCATTTG AGCCCCCGATTGCCTGAATTTCTTGATGTTGCAGTCAAACAACTGAACACTCCTAAACTGAAGGAAACCATTTCAGTAGCAAATAATGCCTGTTGGGCTA TTGGAGAATTAGCAGTTAAGGTTCGTCAAGAAATTTCTCCTATTGTTATGACTGTCATGTCATGCTTGGTTCCAATCCTTCAACATTCAGAGGAACTGAA CAACAAGTCACTCACAGAAAATAGTGCAATCACACTTGGGAGACTTGCATGGGTTTGTCCTGAGCTTGTATCACCACATATGGAGCATTTCATGCAATCA TGGTGCATTGCTTTGTCAATGATACATGATGATATTGAGAAGGAGGATGCCTTCCGAGGTCTATGTGCAATGGTCAGAACAAATCCTTCTGGAGCTCTAA GTTCGCTTGTTTTCATGTGCAAAGCGATCGCAAGTTGGCATGAAATAAGAAGTGCAGAGCTACACAATGAAGTTTGCCAGGTGTTGCATGGTTATAAACA GATGCTCAGGAATGGAGCATGGGACCAGTACATGTCTGCTTTGGAGCCCCCAGTGAAGGAGAAGCTATTAAAATATCAAGTATGA
AA sequence Show only first row Show all	>Potri.004G177700.1 pacid=42796758 polypeptide=Potri.004G177700.1.p locus=Potri.004G177700 ID=Potri.004G177700.1.v4.1 annot-version=v4.1 MEAPTAAAWQPQEEGFKEICGLLEHQISPTSTADKSQIWKQLQHISQFPDFNNYLAFILSRAEGKSVEIRQAAGLLLKNNLRNAYKTMTPDNQQYIKSEL LPCLGAADRHIRSTAGTIISVIVQLGGILGWPELLQAVITCLDSNDLNHMEGAMDALSKICEDIPQVLDSDVPGLSERPIKIFLPRLYQFFQSPHPSLRK LALGSVNQYIMLMPAALYASMNQYLQGLFALANDQAAEVRKLVCAAFVQLIEVRPSFLEPHLRSVAEYILQVNKDGDDEVALEACEFWSAYCDAQLPTET LREFLPRLIPVLLSNMAYADDDESLAEAEEDESLPDRDQDLKPRFHTSRFHGSDSMEDDDDDIVNVWNLRKCSAAALDILSNVFGDEILPTLMPVVQAKL SASGDESWKDREAAVLALGAVAEGCINGLYPNLSQMVGFLIPLLDDKFPLIRSISCWTISRFSKYVVQESGHQKGYEQFDEVLMGLLRRILDTNKRVQEA ACSALATLEEEAAEELAPRLEIILQHLVCAFGKYQRRNLRIVYDAIGTLADAVGAELNQPAYLEILMPPLIAKWQQLSNSDKDLFPLLECFTSLAKALGA GFSQFAEPVFQRCTAIIHSQQLAKADPVAAGFLYDKEFIVCSLDLLSGLAEGLGSGIESLVSQSNLRDLLLQCCMDDAYDVRQSAFALLGDLARVCTVHL SPRLPEFLDVAVKQLNTPKLKETISVANNACWAIGELAVKVRQEISPIVMTVMSCLVPILQHSEELNNKSLTENSAITLGRLAWVCPELVSPHMEHFMQS WCIALSMIHDDIEKEDAFRGLCAMVRTNPSGALSSLVFMCKAIASWHEIRSAELHNEVCQVLHGYKQMLRNGAWDQYMSALEPPVKEKLLKYQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16950		ATTRN1	transportin 1 (.1.2)		Potri.004G177700 [exp]	0	1
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Potri.004G235900 [exp]	4.89	0.7453	Pt-ATRLI1.1
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Potri.016G081000 [exp]	6.48	0.7403
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Potri.002G081600 [exp]	9.59	0.7366	UBP26.1
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.014G084500 [exp]	9.64	0.7381
AT4G02480			AAA-type ATPase family protein...		Potri.012G096300 [exp]	17.49	0.7200
AT3G58560			DNAse I-like superfamily prote...		Potri.016G061700 [exp]	18.70	0.7076
AT5G49830		EXO84B	exocyst complex component 84B ...		Potri.008G009100 [exp]	19.18	0.6752
AT4G22030			F-box family protein with a do...		Potri.011G007000 [exp]	20.73	0.6462
AT2G20815		QWRF3	QWRF domain containing 3, Fami...		Potri.013G146100 [exp]	26.15	0.6806
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.010G006300 [exp]	27.34	0.6995

Compare expression of checked genes

Potri.004G177700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.