Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38490 70 / 1e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G138400 [exp] 74 / 7e-16 AT3G09880 336 / 4e-110 Protein phosphatase 2A regulatory B subunit family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025084 [exp] 76 / 1e-17 AT4G38490 94 / 7e-25 unknown protein Lus10023998 [exp] 74 / 1e-15 AT3G09880 359 / 3e-117 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00584 [poplar] [flax] SecE SecE/Sec61-gamma subunits of protein translocation complex
Representative CDS sequence Show only first row Show all	>Potri.004G177800.2 pacid=42795601 polypeptide=Potri.004G177800.2.p locus=Potri.004G177800 ID=Potri.004G177800.2.v4.1 annot-version=v4.1 ATGGCCATTGTTACTGGGTTCCCGAAACAATTTTCAGGTTTGGTTTGTCCTCGTAACTATAAACTATCATTTGGGACTCAGAGATGTAATGAAGTCAAAT TTAGTGATTATGGTGCTGTTCGGCTGGAATGTAGAAGGAATCCCAGAGGAGGACTTCGATATGTTCCTGCCAAGCTGTCTTGCAATAAGCATGTTCTGTA TGCAGGAAGAGGTCCTTACCAATTGAGCCATGAAGATGACTTGCCCCAAAAGCCCTTTTGGCTAAGTTTTATTAAGGAAGCCATCTGGGCTTGGAAAGCT TTGTTTGTATTTCTGGTTGAGCAACCCGGTCAGCTGAAGTACATAGAGTGGCCAGGTTTCCAGAGCACGCTGAGAACTGCCATGCTCACTCTTGTTCTTG TTGCGCTGCTGATTGTTGCCCTATCTTCAGTTGACTCTGTTCTATGCTATGTGTTAGCTTTGCTTCTAAGGAGAACCCCTTGA
AA sequence Show only first row Show all	>Potri.004G177800.2 pacid=42795601 polypeptide=Potri.004G177800.2.p locus=Potri.004G177800 ID=Potri.004G177800.2.v4.1 annot-version=v4.1 MAIVTGFPKQFSGLVCPRNYKLSFGTQRCNEVKFSDYGAVRLECRRNPRGGLRYVPAKLSCNKHVLYAGRGPYQLSHEDDLPQKPFWLSFIKEAIWAWKA LFVFLVEQPGQLKYIEWPGFQSTLRTAMLTLVLVALLIVALSSVDSVLCYVLALLLRRTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38490			unknown protein		Potri.004G177800 [exp]	0	1
AT1G52730			Transducin/WD40 repeat-like su...		Potri.001G174600 [exp]	4.24	0.9429
AT5G53080			Tetratricopeptide repeat (TPR)...		Potri.015G010800 [exp]	7.21	0.9489
AT5G22210			unknown protein		Potri.009G162200 [exp]	8.94	0.9261
AT5G66470			RNA binding;GTP binding (.1)		Potri.007G021900 [exp]	10.81	0.9293
AT2G45350		CRR4	CHLORORESPIRATORY REDUCTION 4,...		Potri.014G068800 [exp]	12.96	0.9238
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G140800 [exp]	21.63	0.9213	GSTA.1
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Potri.005G209900 [exp]	24.49	0.9248
AT5G50110			S-adenosyl-L-methionine-depend...		Potri.012G076100 [exp]	29.47	0.9207
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.001G075800 [exp]	30.13	0.9267
AT3G04310			unknown protein		Potri.010G063300 [exp]	35.44	0.9222

Compare expression of checked genes

Potri.004G177800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.