Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26020 363 / 2e-121 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT5G03470 359 / 7e-120 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G09880 357 / 5e-119 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT1G13460 356 / 1e-118 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT5G25510 352 / 9e-117 Protein phosphatase 2A regulatory B subunit family protein (.1) AT4G15415 346 / 2e-114 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 343 / 4e-113 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G54930 339 / 7e-112 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 329 / 3e-108 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G138400 [exp] 776 / 0 AT3G09880 336 / 4e-110 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.016G098400 [exp] 356 / 1e-118 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.008G180000 [exp] 357 / 2e-118 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054300 [exp] 355 / 1e-117 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.018G034200 [exp] 351 / 1e-116 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G247100 [exp] 349 / 7e-116 AT5G25510 800 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.014G157000 [exp] 349 / 2e-115 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.017G070100 [exp] 347 / 1e-114 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.010G054400 [exp] 344 / 7e-114 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025085 [exp] 570 / 0 AT4G15415 353 / 7e-117 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10023998 [exp] 566 / 0 AT3G09880 359 / 3e-117 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10032082 [exp] 366 / 3e-122 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 355 / 9e-118 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10030002 [exp] 352 / 1e-116 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10023920 [exp] 350 / 2e-116 AT5G03470 773 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10008104 [exp] 348 / 2e-116 AT5G25510 723 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10013141 [exp] 350 / 3e-116 AT5G25510 780 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10015144 [exp] 350 / 4e-116 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10021511 [exp] 343 / 1e-114 AT3G09880 739 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01603 [poplar] [flax] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Potri.004G177900.1 pacid=42795325 polypeptide=Potri.004G177900.1.p locus=Potri.004G177900 ID=Potri.004G177900.1.v4.1 annot-version=v4.1 ATGGGTATTCTCAGAAACTCCCCAAAAGCCTCTCCAAGAAAAAAATCTACCTCCCTTCAGCTCCTCTTTGATTTGGAGCCCAACAATAGCAATGGCACCA AGATGTTCAGTTCCAAAAGTGGCAAGCAGTCTGCCTTCGAATCTGAATACGGAGAAATCTTGTCTATTATATCTCACTGCCGCTCTATTTTTACTTTCAC TGATCCTTTGGAGTCTCCCTTGGAGCGAGATATTAAGCGATTAAAGCTTTTCCAGCTCCTTTCTTTCGTGAAAAAACCCATAAAGCCACTACCTGAAGAA ATTACACGCCCAGTTGTGTCCATGCTATCGGCCAACCTTTTCAGGCCTCTCCCTCCATCTTCCAAACAAACCGTCATCTGCGAATTACCTGAGGATGAAG ACCTTGTTTCCACTCTCTCGCCTGCTTGGCCACACCTGCAAGTTGCTTACGATATTCTGCTTCGACTAGTCCTCAATATTGATCCCAAAATTCTCCGTTG TTATGTTGATGAACCTTTTCTTGTCAACCTTCTGTCCCTCTTTCAGTCTGAAAACCCGAGAGAACGCGAAAGTCTGAAGAACGTTTACCACCGGATATAT TCCAGGTTCACTTTTTACAGGGCATTCATGAGGAAATCGATGAACCATGTCTTCTTGCACTATGTTTTCGAGACAGAGAAGCATTCTGGGATCGGTGAGC TGCTTGAGATATGGGGAAGCATCATCAATGGTTTCGCTGTCCCACTAAAAGAGGAGCACAAGCTGTTCTTGATGAGAGTGCTTATCCCTTTGCACAAGGG CAAGGGGATGCAAGTCTACCACAGGCAACTGGCGTATTGTATTAATCAATTTGTGCAGAAGGAACCAATGCTTGGTGGGGTGGCTGTCAGAGGGATCTTA AAGTATTGGCCTGCCACAAATTGTCAGAAAGAAGTTCTACTCCTTGGTGAATTGGAGGAATTGGTAGAGAATATCGATCCCGGTCACTATAGAAAGTTAG CTTTGCCTATATGTGCCCAAATTTCAAGATGCATGAATAGTTTAAACTCACAGGTCGCGGAGCGTGCACTATACGTGTGGAACAACGAGCAATTTGTGAA GATGGCATCATCAATGATGAAAGAGGTGTTTCCTGTGGTTGTAGAGAGCGTGGAAAAGAACCTGAAATGGCACTGGAGCGAGAGTGTTAAACAACTGACA GAAAATGTGAAGACAATGATAGAAGAAACGGATCCAAATTTATATGACAGTTGCCTGGAAGAAATGGCCCACAAAGAGTACTTAGCTGGCCAGGAAGATA TCAAAAGGAGAGAAAAATGGGAGAGATTAGAATTGGCAGCAGCCAAGAATCATCAGTTTTTTCCAGCCACAACAATGTCACGTTATTGA
AA sequence Show only first row Show all	>Potri.004G177900.1 pacid=42795325 polypeptide=Potri.004G177900.1.p locus=Potri.004G177900 ID=Potri.004G177900.1.v4.1 annot-version=v4.1 MGILRNSPKASPRKKSTSLQLLFDLEPNNSNGTKMFSSKSGKQSAFESEYGEILSIISHCRSIFTFTDPLESPLERDIKRLKLFQLLSFVKKPIKPLPEE ITRPVVSMLSANLFRPLPPSSKQTVICELPEDEDLVSTLSPAWPHLQVAYDILLRLVLNIDPKILRCYVDEPFLVNLLSLFQSENPRERESLKNVYHRIY SRFTFYRAFMRKSMNHVFLHYVFETEKHSGIGELLEIWGSIINGFAVPLKEEHKLFLMRVLIPLHKGKGMQVYHRQLAYCINQFVQKEPMLGGVAVRGIL KYWPATNCQKEVLLLGELEELVENIDPGHYRKLALPICAQISRCMNSLNSQVAERALYVWNNEQFVKMASSMMKEVFPVVVESVEKNLKWHWSESVKQLT ENVKTMIEETDPNLYDSCLEEMAHKEYLAGQEDIKRREKWERLELAAAKNHQFFPATTMSRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26020			Protein phosphatase 2A regulat...		Potri.004G177900 [exp]	0	1
					Potri.003G223700 [exp]	1.73	0.8908
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033101 [exp]	2.44	0.8839
AT3G19620			Glycosyl hydrolase family prot...		Potri.001G294700 [exp]	3.46	0.8534
					Potri.015G072732 [exp]	5.47	0.8824
AT1G26660			Prefoldin chaperone subunit fa...		Potri.010G163600 [exp]	6.00	0.8607
AT5G50110			S-adenosyl-L-methionine-depend...		Potri.015G071001 [exp]	6.00	0.8324
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.002G098700 [exp]	6.48	0.7731
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.008G008551 [exp]	6.70	0.8547
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Potri.014G040700 [exp]	9.38	0.8113
					Potri.014G116166 [exp]	9.38	0.8328

Compare expression of checked genes

Potri.004G177900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.