Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35130 919 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 540 / 3e-180 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 529 / 4e-177 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 513 / 3e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15510 510 / 7e-169 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 494 / 1e-163 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 488 / 4e-160 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 475 / 3e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 466 / 9e-153 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 467 / 2e-152 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G006800 [exp] 555 / 0 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G191000 [exp] 549 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 540 / 3e-180 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 527 / 1e-175 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 526 / 1e-175 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G058700 [exp] 523 / 6e-174 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 521 / 6e-174 AT3G22690 582 / 0.0 unknown protein Potri.002G155100 [exp] 516 / 5e-172 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G083700 [exp] 509 / 7e-169 AT3G22690 1050 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035619 [exp] 977 / 0 AT4G35130 794 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003233 [exp] 963 / 0 AT4G35130 775 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 538 / 1e-180 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10017446 [exp] 532 / 6e-178 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 516 / 4e-171 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018897 [exp] 525 / 6e-169 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 507 / 3e-168 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026460 [exp] 504 / 2e-166 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 503 / 9e-166 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025009 [exp] 496 / 2e-164 AT1G15510 1020 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.004G178200.1 pacid=42795959 polypeptide=Potri.004G178200.1.p locus=Potri.004G178200 ID=Potri.004G178200.1.v4.1 annot-version=v4.1 ATGGCTTCAGCACTCATTCACTGCTCTCTCTACAACGCCTACAAAAACGCCTCTCCAGAGCAAAACAAACCACCAAAAGCAGCACAGTTCAAGCGAAAAA CCACAAGAAAATCACCCTTTATCAAGAGAGCCCAATCAAAGACTTCATTCAAACCTCTGGCGCGTCCCAACGATCTCAATATCACAAGGGATCTCTGTGG CTTTGTTGAATCTGGGTTGATGGGCAATGCACTCGATATGTTTGAGAAAATGAACCACTCAGATACTTTTATATGGAATGTTATTATTAGAGGGTATACA AATAATGGGTTGTTTCAAGAAGCTATTGATTTTTATTATAGGATGGAATGTGAAGGGATTAGAAGTGATAATTTTACTTTTCCATTTGTGATCAAAGCTT GTGGTGAGTTGTTGGCCTTGATGGTAGGGCAAAAGGTTCATGGGAAGTTGATTAAAATTGGTTTTGATTTAGATGTTTATGTTTGTAATTTTCTTATTGA TATGTATTTAAAGATTGGATTTATTGAGCTTGCGGAGAAGGTGTTTGATGAAATGCCTGTGAGGGACTTGGTTTCTTGGAATTCTATGGTTAGCGGCTAT CAAATAGATGGTGATGGATTGAGCTCGTTGATGTGTTTTAAAGAAATGCTGCGGTTAGGAAATAAGGCTGATAGGTTTGGTATGATTAGTGCTTTGGGTG CTTGTTCTATTGAGCATTGTTTACGAAGTGGAATGGAAATTCATTGCCAAGTGATTAGAAGTGAGCTTGAATTGGACATTATGGTACAGACTTCTCTTAT TGATATGTATGGTAAGTGTGGTAAGGTGGATTATGCTGAGAGGGTATTTAATAGGATTTATTCCAAAAATATTGTGGCTTGGAATGCTATGATCGGTGGG TATGCTTTAAATAATTATTTTTTTGAGTCTTTTGCTTGCTTGAAAAGGATGCAAGAGGATGATAAAGTGATTCCAGATGTTATTACGATGATAAACCTGC TCCCTTCTTGTTCACAATCAGGAGCTCTCTTGGAAGGTAAATCTATCCATGGGTTTGCCATTAGAAAAATGTTTCTTCCTTATTTAGTCTTGGAAACTGC TTTAGTTGATATGTATGGAAAATGCGGCGAGTTGAAACTGGCAGAGCATGTGTTTAATCAAATGAATGAAAAGAACATGGTATCATGGAACACCATGGTT GCTGCTTATGTACAGAATGAGCAGTACAAAGAGGCTTTGAAAATGTTTCAACACATTTTGAATGAGCCTCTTAAACCAGACGCTATTACTATTGCAAGCG TCCTGCCTGCCGTTGCTGAATTAGCCTCAAGGAGTGAGGGTAAGCAGATTCATTCTTATATCATGAAATTAGGGCTTGGTTCAAATACTTTCATTTCAAA TGCAATTGTTTACATGTATGCAAAATGTGGTGATCTCCAGACAGCAAGAGAATTTTTTGATGGTATGGTATGTAAGGATGTAGTTTCATGGAACACAATG ATCATGGCTTATGCTATTCATGGGTTCGGAAGAACTTCCATCCAGTTTTTCTCTGAAATGAGGGGAAAGGGTTTCAAACCCAATGGGAGCACTTTTGTTT CTCTGTTAACGGCCTGCAGCATTTCTGGCCTGATTGACGAAGGCTGGGGTTTCTTTAATTCAATGAAAGTGGAATATGGCATTGATCCAGGAATAGAGCA TTATGGTTGTATGCTAGATCTCCTTGGTCGCAATGGAAATCTTGACGAAGCAAAGTGTTTCATTGAAGAAATGCCTTTGGTCCCTACAGCCAGGATATGG GGTTCCTTACTAGCTGCAAGTAGGAACCACAACGACGTAGTCTTAGCTGAACTAGCAGCTAGGCATATATTATCTCTTAAGCACGACAATACGGGTTGCT ATGTACTACTCTCTAATATGTATGCTGAAGCTGGAAGATGGGAAGATGTAGATCGGATTAAATATCTTATGAAGGAACAAGGACTGGTGAAGACAGTTGG GTGTAGCATGGTTGATATCAATGGTAGAAGTGAGAGTTTCATCAATCAAGACAGGTCCCATGCCCATACAAACTTGATTTATGATGTGTTGGATATTCTA CTGAAGAAGATAGGGGAAGACATCTATCTTCATTCCCTCACCAAGTTCAGACCACTAGACGTGGCCAAGAAACGAGGGAACTCGCCAGAATATCACAGCG TCAAACTAGCTATCTGCTTCGGCTTGATCTCTACAGCAATCGGAAACCCTGTTATTGTCAGGAAAAACACTAGAATATGTGATGATTGCCATAGAGCTGC GAAGAAGATTTCGCAGGTTACCAAAAGAGAGATTGTAGTGGGGGATGCGAAAGTATTTCACCACTTCCGGGATGGATGTTGTTCGTGTAGAGATTATTGG TGA
AA sequence Show only first row Show all	>Potri.004G178200.1 pacid=42795959 polypeptide=Potri.004G178200.1.p locus=Potri.004G178200 ID=Potri.004G178200.1.v4.1 annot-version=v4.1 MASALIHCSLYNAYKNASPEQNKPPKAAQFKRKTTRKSPFIKRAQSKTSFKPLARPNDLNITRDLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYT NNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGY QIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGG YALNNYFFESFACLKRMQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMV AAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTM IMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIW GSLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSHAHTNLIYDVLDIL LKKIGEDIYLHSLTKFRPLDVAKKRGNSPEYHSVKLAICFGLISTAIGNPVIVRKNTRICDDCHRAAKKISQVTKREIVVGDAKVFHHFRDGCCSCRDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35130			Tetratricopeptide repeat (TPR)...		Potri.004G178200 [exp]	0	1
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Potri.005G252300 [exp]	2.00	0.9627
AT5G08510			Pentatricopeptide repeat (PPR)...		Potri.002G175900 [exp]	3.16	0.9435
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.018G085800 [exp]	3.74	0.9489
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	3.74	0.9602
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.003G031600 [exp]	4.00	0.9474
AT2G01390		EMB3111	EMBRYO DEFECTIVE 3111, Tetratr...		Potri.005G127500 [exp]	4.89	0.9507
AT5G06400			Pentatricopeptide repeat (PPR)...		Potri.006G200800 [exp]	6.48	0.9405
AT2G13600			Pentatricopeptide repeat (PPR)...		Potri.012G018800 [exp]	6.48	0.9491
AT5G39980			Tetratricopeptide repeat (TPR)...		Potri.017G075700 [exp]	7.54	0.9517
AT5G59600			Tetratricopeptide repeat (TPR)...		Potri.001G243800 [exp]	8.83	0.9210

Compare expression of checked genes

Potri.004G178200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.