Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16980 418 / 1e-143 Major facilitator superfamily protein (.1.2) AT2G16990 417 / 2e-143 Major facilitator superfamily protein (.1.2) AT2G16970 391 / 2e-133 MEE15 maternal effect embryo arrest 15, Major facilitator superfamily protein (.1) AT5G42210 234 / 4e-74 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G138900 [exp] 712 / 0 AT2G16990 405 / 1e-138 Major facilitator superfamily protein (.1.2) Potri.005G245900 [exp] 570 / 0 AT2G16980 412 / 3e-141 Major facilitator superfamily protein (.1.2) Potri.002G016200 [exp] 559 / 0 AT2G16980 384 / 5e-130 Major facilitator superfamily protein (.1.2) Potri.008G022100 [exp] 262 / 5e-83 AT2G16980 211 / 3e-63 Major facilitator superfamily protein (.1.2) Potri.010G237300 [exp] 257 / 4e-81 AT2G16980 203 / 3e-60 Major facilitator superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023994 [exp] 569 / 0 AT2G16980 412 / 2e-141 Major facilitator superfamily protein (.1.2) Lus10005626 [exp] 554 / 0 AT2G16980 396 / 4e-135 Major facilitator superfamily protein (.1.2) Lus10025087 [exp] 546 / 0 AT2G16980 405 / 3e-138 Major facilitator superfamily protein (.1.2) Lus10004157 [exp] 533 / 0 AT2G16980 394 / 2e-133 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.004G178600.10 pacid=42795931 polypeptide=Potri.004G178600.10.p locus=Potri.004G178600 ID=Potri.004G178600.10.v4.1 annot-version=v4.1 ATGGAGAAGCTAACAGAACTGAGCCACCTCCTTGTGACAGTATTCCTCTCCAGCTTTGCTAGTTTAATGGTGATCCCGGCCATAACCGATGTCACCATGG TAGCAGTTTGTCCTGGAAAAGATGAGTGCTCTCTTGCGATTTACCTCTCCGGGTTCCAGCAAGCTATCATCGGACTGGGGACAGTTGTGATGATGCCGCT AATAGGAAATCTATCAGACCAGTATGGAAGGAAAGCCTTGCTCACACTCCCTATGACTCTCTCCATTATTCCTTTAGTTATACTGGCATACAGTAGGACA ACCAACTTCTTCTATGCCTACTATGTGCTCAGGACCCTCACGGCTATGATCTGTGAAGGCAGCATCAACTGCCTTGCTCTTGCTTATGTGGCAGACAACG TTTTAGAGAGACAGAGAACATCAGCATTTGGAATTCTATCTGGCATAGCCACAGCCGCATTTGTCTGTGGAACCTTAGCTGCTCGTTTCCTCTCCACTGC TTTAACGTTTCAGGTGGCTGCGTTGGTGTCAATGCTTGCTGCTGTGTACATGAGAATTTTCCTCGAAGAGAGTCTACCAAATGGCGAAAATTTGACGCAG CCAATCTTGAAGAGCGGACAGGATGATCACTGTCAAGATGGTGATTTATCAAGGAAGGCGCCGGTATTGAAGAAGATCCCATCAATTCAGGATATCATTG GCTTGCTGAAGAGCAGGGTAACATTTTCGCAAGCAGCAGTTGTTGCATTCTTCAATAGTCTTGCAGAAGGTGGAATGCAAGCTAGCATCATGTACTACTT GAAGGCTCGTTTTCACTTCAGCAAAAACCATTATGCTGATCTGATGCTACTTCTTGGCATTGCGGGAATGGCCTCACAGCTGGTTTTCATGCCCTTGTTG GCACCACATGTAGCAGAGGAAAAACTGCTGGCAATAGGGCTTTTAGGGGGCATCGCAGATGCATTGCTTTACAGTGTAGCATGGTCAAATTGGGTCCCAT ATGCCACCACCATTTTTGCGGTTTTTATTGTTTGCGTGCCTCCATGTTTACGCAGCATTGCATCGAAACAAGTAGGGCCAACTGAGCAGGGGAAGGCTCA AGGATGCATTTCAGGAATAATCTCCTTCGCAAACATCATCTCCCCCTTAATCTTTAGTCCTCTGACAGCTTTATTCCTGTCTGAAGATGCACCATTTCAT TTCCCTGGCTTCAGTATTTTGTGCATTGGATTTGTAACGATGATTGCATTCTTTCAGAGTGTTCTCATGAGGGGTCCTCCTCCTGTTTCAAGTCACAAAA TCAGCTGCAACAGCTTGGTAGCCTAG
AA sequence Show only first row Show all	>Potri.004G178600.10 pacid=42795931 polypeptide=Potri.004G178600.10.p locus=Potri.004G178600 ID=Potri.004G178600.10.v4.1 annot-version=v4.1 MEKLTELSHLLVTVFLSSFASLMVIPAITDVTMVAVCPGKDECSLAIYLSGFQQAIIGLGTVVMMPLIGNLSDQYGRKALLTLPMTLSIIPLVILAYSRT TNFFYAYYVLRTLTAMICEGSINCLALAYVADNVLERQRTSAFGILSGIATAAFVCGTLAARFLSTALTFQVAALVSMLAAVYMRIFLEESLPNGENLTQ PILKSGQDDHCQDGDLSRKAPVLKKIPSIQDIIGLLKSRVTFSQAAVVAFFNSLAEGGMQASIMYYLKARFHFSKNHYADLMLLLGIAGMASQLVFMPLL APHVAEEKLLAIGLLGGIADALLYSVAWSNWVPYATTIFAVFIVCVPPCLRSIASKQVGPTEQGKAQGCISGIISFANIISPLIFSPLTALFLSEDAPFH FPGFSILCIGFVTMIAFFQSVLMRGPPPVSSHKISCNSLVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16980			Major facilitator superfamily ...		Potri.004G178600 [exp]	0	1
AT1G54740			Protein of unknown function (D...		Potri.005G037600 [exp]	1.00	0.9776
					Potri.001G076500 [exp]	2.82	0.9404
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Potri.011G075800 [exp]	3.16	0.9598	AG1.1
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.014G107200 [exp]	5.47	0.9474
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.009G099032 [exp]	5.74	0.9560
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Potri.018G081200 [exp]	6.92	0.9458
AT4G37200		HCF164	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.007G034400 [exp]	7.41	0.9387
AT1G06540			unknown protein		Potri.005G201300 [exp]	7.74	0.9333
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043700 [exp]	8.71	0.9519
AT1G66920			Protein kinase superfamily pro...		Potri.007G125900 [exp]	9.48	0.9368

Compare expression of checked genes

Potri.004G178600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.