Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35140 537 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT4G38480 494 / 5e-173 Transducin/WD40 repeat-like superfamily protein (.1) AT3G45620 388 / 6e-131 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G10940 142 / 5e-36 ASG2 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) AT2G43770 62 / 3e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35370 60 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT4G18905 51 / 9e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G18130 50 / 1e-06 RACK1C_AT receptor for activated C kinase 1C (.1) AT1G52360 50 / 2e-06 Coatomer, beta' subunit (.1.2) AT4G18900 49 / 4e-06 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139000 [exp] 762 / 0 AT4G35140 602 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G158300 [exp] 129 / 1e-31 AT5G10940 1080 / 0.0 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G103132 [exp] 106 / 5e-26 AT5G10940 390 / 2e-132 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G103066 [exp] 73 / 9e-15 AT5G10940 209 / 4e-64 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.007G019601 [exp] 60 / 2e-09 AT4G18905 566 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.019G096900 [exp] 59 / 2e-09 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G019833 [exp] 59 / 3e-09 AT4G18905 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G002700 [exp] 57 / 2e-08 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.007G050100 [exp] 54 / 1e-07 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025088 [exp] 583 / 0 AT4G35140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023993 [exp] 573 / 0 AT4G35140 557 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034751 [exp] 412 / 6e-139 AT3G45620 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10033290 [exp] 408 / 7e-139 AT3G45620 557 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10040538 [exp] 93 / 1e-21 AT5G10940 291 / 7e-95 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Lus10040537 [exp] 63 / 2e-11 AT5G10940 219 / 3e-68 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Lus10012230 [exp] 62 / 3e-10 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 62 / 5e-10 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10015348 [exp] 60 / 3e-09 AT4G18905 527 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10026094 [exp] 54 / 8e-08 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.004G178700.2 pacid=42794370 polypeptide=Potri.004G178700.2.p locus=Potri.004G178700 ID=Potri.004G178700.2.v4.1 annot-version=v4.1 ATGAAAAAAAGAAGCAGCGCGGACATCGATCAAGCAGTAGTTAATGTTTGGAAACGCGAACTCGGCCAACTCTCCACTCGCAATTTCGCTCACCGCTTCG CCGCTTCCGAGGATCTTGTGTCGAGGCTTGAAATTCACAAGAAGTTAGAGAAGCACGATGGATGTGTAAACACGCTGAGTTTCAATGCAGGTGGTGACAT TTTGGTGTCGGGCTCAGATGACCTGCGGGTGATTTTATGGGATTGGGAAACTGGGCGTGATAAGCTTTCCTTTCGTTCGGGTCATGATAATAACGTGTTT CAAGCCAACTTCATGCCCTTTTCTGACGATCGAACTATTATTACTTGTGCTGCTGATGGCGAGATTCGGCAAGCTCAAATTCTGGAAGGGGGGGAAGTGA AGACTATATTGCTAGGAAAACATGAGGAATCACAAGTTCATAAGTTGGCTATTGAGCCTGGGAGTCCTCATATATTCTATTCTTGTGGCGAGGATGGAGT GGTTCAACATTTTGATTTGAGAACCAGATCTGCCACAGAACTTTTTACTTGCCTTTGTGTTGATGATTTGAAGGGGTATCGTCCATATGTCCCTCTAAAT GCTATTGCTATTGATCCAAGGAACCCAAATCTCTTTGCAGTTGGGGGAATGGATAAGTTTGCTCAACTTTATGACATCCGCAAGTACAAGTGGGATGGGT CAAGTGATTTTGGTCAACCTGCATGTTATTTCTGTCCTCAGCATTTGATTGGTAATGAAGATACTGGAATCACAGGCTTGTCATTCTCAGATCAGAGTGA GCTTCTAGTCTCATATGGTGACGAGTTCATCTATCTTTTTACACAAAGCATGGGTTTGAGAAATCCTCCATTTCCATCCTCTTCATTTATGGTTTCAATG GGCAGTGATACAAGCAAAGTAGAACCTGGATCTATAGCTTCTTCATCATCTATGGATCTGGATGGGAAAAATGCCCCCCAAGTTTATATGGGCCACAGAA ATTGTGAGACTGTGAAGGGTGTGAGCTTTTTTGGGCCAAGATGCGAGTATGTTTCTAGCGGGTCTGACTGTGGTCGGATTTTTATTTGGAAGAAAAGGGG TGGAGAGCTTATTCGTGTTATAGAAGCGGATAAGGATGTGGTAAATTGTACTGAGCCCCATCCCCATACCATGGCACTTGCTAGCAGTGGAATCGAGTAT GATATAAAAATATGGACCCCAAAAGCTATTGAGAGAGCTACTCTGCCAACAAACATTGGACAGCTTCTGATGGCCAATCGCATTGATTGGTTTGGCATGA GTGACAACAACGACGACGATGATGGTGACAGTGATGACAGTGATATTGATGATGACTTTTACGATGATTATAGTGACAACGGTGGCGTTTGTGATGAGGA TGATGATAAATTTCTTGGCAGTTATGATGAATGTTGA
AA sequence Show only first row Show all	>Potri.004G178700.2 pacid=42794370 polypeptide=Potri.004G178700.2.p locus=Potri.004G178700 ID=Potri.004G178700.2.v4.1 annot-version=v4.1 MKKRSSADIDQAVVNVWKRELGQLSTRNFAHRFAASEDLVSRLEIHKKLEKHDGCVNTLSFNAGGDILVSGSDDLRVILWDWETGRDKLSFRSGHDNNVF QANFMPFSDDRTIITCAADGEIRQAQILEGGEVKTILLGKHEESQVHKLAIEPGSPHIFYSCGEDGVVQHFDLRTRSATELFTCLCVDDLKGYRPYVPLN AIAIDPRNPNLFAVGGMDKFAQLYDIRKYKWDGSSDFGQPACYFCPQHLIGNEDTGITGLSFSDQSELLVSYGDEFIYLFTQSMGLRNPPFPSSSFMVSM GSDTSKVEPGSIASSSSMDLDGKNAPQVYMGHRNCETVKGVSFFGPRCEYVSSGSDCGRIFIWKKRGGELIRVIEADKDVVNCTEPHPHTMALASSGIEY DIKIWTPKAIERATLPTNIGQLLMANRIDWFGMSDNNDDDDGDSDDSDIDDDFYDDYSDNGGVCDEDDDKFLGSYDEC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35140			Transducin/WD40 repeat-like su...		Potri.004G178700 [exp]	0	1
AT3G43220			Phosphoinositide phosphatase f...		Potri.018G063700 [exp]	1.00	0.8487
AT4G21700			Protein of unknown function (D...		Potri.011G052500 [exp]	2.00	0.8170
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Potri.005G110500 [exp]	4.24	0.6996
AT5G03250			Phototropic-responsive NPH3 fa...		Potri.008G038600 [exp]	7.48	0.7582
AT5G17250			Alkaline-phosphatase-like fami...		Potri.003G059300 [exp]	27.56	0.6607
					Potri.010G148450 [exp]	38.34	0.6604
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Potri.016G096500 [exp]	38.67	0.7000
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Potri.009G004100 [exp]	40.19	0.7006
AT1G65950			Protein kinase superfamily pro...		Potri.004G075100 [exp]	43.58	0.7198
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.003G110100 [exp]	43.98	0.7204

Compare expression of checked genes

Potri.004G178700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.