Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78610 818 / 0 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT3G14810 785 / 0 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT1G53470 779 / 0 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT2G17000 758 / 0 Mechanosensitive ion channel family protein (.1) AT2G17010 477 / 8e-156 Mechanosensitive ion channel family protein (.1) AT5G12080 446 / 1e-144 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 424 / 7e-136 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT1G49260 59 / 6e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G384100 [exp] 884 / 0 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.011G105500 [exp] 869 / 0 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 672 / 0 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Potri.006G222500 [exp] 481 / 1e-157 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G144100 [exp] 479 / 1e-156 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G073000 [exp] 458 / 2e-149 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 424 / 1e-136 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042499 [exp] 878 / 0 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10022654 [exp] 876 / 0 AT1G78610 817 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10038148 [exp] 870 / 0 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10025092 [exp] 834 / 0 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10023990 [exp] 771 / 0 AT1G78610 762 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10005556 [exp] 753 / 0 AT1G53470 758 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10004153 [exp] 560 / 0 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10013692 [exp] 479 / 1e-162 AT1G53470 496 / 6e-170 mechanosensitive channel of small conductance-like 4 (.1) Lus10016423 [exp] 475 / 1e-155 AT5G12080 786 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10019694 [exp] 471 / 4e-154 AT5G12080 778 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [poplar] [flax] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Potri.004G178900.1 pacid=42796625 polypeptide=Potri.004G178900.1.p locus=Potri.004G178900 ID=Potri.004G178900.1.v4.1 annot-version=v4.1 ATGGATTTCTCTCTTAAGAAATCATTCAAAGGCAATAGTTCTTTTAAACACATTAGGAGATTCTCTGGTGGCGGAGGGGGGGACAATAATTATAGCATCA GCCCTGAAGAGCTGCCTATTCTCCACCACCATCAATCAGATATTCCATATGACAATCAACAACGAACGTCAATAGGTTCAAATTACCATAATGAGGTCAT TGTCAAGGTTGACAATGGAAATTCCAGCTCAGAAGACAGTTCTACTGATGTTGCTAAGGTTGACAGAGCACCAAGTTTTGATTTTACGCAAAATGGACAA CAGGACGTGATGCAAGACCCGCCTTCGAGGCTAATCGGTCAGTTCTTGGAAAATCAGAAAACCTTTGGTGGCGGCGAGATTACATTGGACATGGACATGG AAATGGATGAACTAAAAGGTGACCGAGGATCATCACATGGAAGACACCTGCCTTCCTTCCCAGAATCATCACCGACTAAGCCATCCTCAAGAGAAATTCG TGTGTCCTTCGAACCGTCTCTCTCCGGAGGCAGCCTTAATGGTGCACTCGAATCTGTCAGAAGGCGATGCAAGGAGGACGGCTCAGTCAATTCTCATCAA CGAAAACAAGAACAGGAACGCGAAGAAGTTTTGAAGTGCTCGTCGAATGCATCCTTTCGGAGACATGCCAATCCACTGTCAAGATTGAAAACTAAATCAA GACTTATAGATGACCCTTCACCACAGGAATTGGAGAGAATGTCAGGGAGGATACCAAAGTCTGGGCCAATGAGATCCGGGATGTTAAGTAGGGCGTTGTA TGATGAGGATGATGAGGATCCATTAGAGGATGTGGACTTACCGGAAGAGTACAAGAAGGACAAGTTAAGTACATTGACTGTCCTCCAATGGTTGAGTTTG ATTGTGATTTTAGCTGCACTGGTGTGTAGTCTTTCTATTCGTGATTTAAAGAAAGTGAAGATTTTGAACCTTAAGTTATGGAAATGGGAAGTTTTGTTGC TGGTTTTGATATGTGGAAGGTTGGTTTCAGGATGGGGGATTCATTTGATAGTGTTTTTCATTGAAAGAAATTTTTTGTTGCGGAAGAGGGTTTTGTATTT TGTGTATGGATTGAGAAAGGGAGTGCAGAATTGTTGGTGGTTAGGGCTTGTTTTGTTGGCATGGCACTTTTTATTTGATAAGAAGGTTCAAAGGGATACC AAAAGTGACTTTCTCGAATATGTTACTAAAATCTTGGTTTGTTTTTTGGTGGGGAATTTCATATGGTTGATTAAGACTTTGATGGTTAAGGTGCTTGCTT CTTCTTTCCATGTTAGCACTTATTTTGACAGGATTCAGGAGTCACTCTTCAATCAATTTGTGATAGAAACATTATCAGGTCCACCATTGATTGAAATACA AAAAGCTGAAGATGATGTAGAGAGGATTGCTGCCGAGGTCCGCAAGCTGCAGAATGCTGGGGTTACTATGCCTGCAGAACTCAAGGCATCTGTCTTCCCA CCAGCAAAGAGTGGCAGGTTGAATCCCAATAGAGTAATGCAGAAAACTTTCACAGCAAAAAGCTTTAAATTTTCCGGGAAACTTTCACAAAAGGGGGAGA AAGAAGCGGATGATGGGATCACAATTGACCACTTACATAAACTTAATACCAAGAATATTTCAGCTTGGAATATGAAGAGGTTGATGAAAATTGTGCGGCA TGGCTCATTGTCCACTTTAGATGAGCAGATACTAGGTGCTGCTACTGAGGACGAATCCACGACACATATCAGAAGCGAAAACGAGGCGAAAGTTGCAGCA AGAAAAATTTTTAATAATGTGGCTCGCCATGGATCAAAGTACATCTACTTGCATGATTTGATGCGCTTTTTGGAAGAAGATCAAGCTTTGAAGACAATGA GTTTCTTTGAAGAAGCATCTGAAACCAGCAGAATCGGTAAATCATCCCTGAAGAACTGGGTGGTCAATGCTTTCAGGGAAAGAAGGGCACTTGCTCTAAC ATTGAATGATACAAAGACTGCTGTGAACAAGCTCCATCAGATGATAAACGCAATAGTTGGCATTGTTATAGTTGTAATCTCCCTAGTCATACTTGGAATT GCCAAGAGCAAATTTTTTGTGCTTCTAGGATCACAGGTTCTTGTTGTGTCCTTTGTTTTTGGAAATACTGCCAAGACATTGTTCGAGTCAATTATCTTCT TGTTCGTTATCCATCCATTTGACGTCGGAGATAGGTGTGAGATAGATGGAGTCCAGCTGATAGTGGAGGAGATGAACATTCTAACAACTTTCTTCCTAAG AGCTGACAATCAGAAAGTCTTGTATCCTAATAGTGTTCTTGCAACCAAACCAATCGGCAATTACTATCGCAGTCCTGACATGGGCGATTCGGTTGAGTTC CACATCCACATATGCACTCCAGCCGAAAAAGTTGCTCTTATGAAGCAGAGAATAACAGGTTACATTGAGGGCAAGAAAGAGCACTGGTATCCCGATCCTT CATTTGTATTCAAGGAATTAGTAGATTTGAACAAGATGATGGTAGCAGTATGGATTAGGCATAGAATGAACCATCAAGACATGGCAGAGAAAACCAAAAG AAGAGCTCTTCTGCTAGAAGAGATGGTGAAAATATTCAGTGAGCTTGACATTCAATACCGATTATTTCCTATTGATATCAACATCCGTGCCATGCCTCCT CTTGACAAAAAGTATCTCCTGCCTTAG
AA sequence Show only first row Show all	>Potri.004G178900.1 pacid=42796625 polypeptide=Potri.004G178900.1.p locus=Potri.004G178900 ID=Potri.004G178900.1.v4.1 annot-version=v4.1 MDFSLKKSFKGNSSFKHIRRFSGGGGGDNNYSISPEELPILHHHQSDIPYDNQQRTSIGSNYHNEVIVKVDNGNSSSEDSSTDVAKVDRAPSFDFTQNGQ QDVMQDPPSRLIGQFLENQKTFGGGEITLDMDMEMDELKGDRGSSHGRHLPSFPESSPTKPSSREIRVSFEPSLSGGSLNGALESVRRRCKEDGSVNSHQ RKQEQEREEVLKCSSNASFRRHANPLSRLKTKSRLIDDPSPQELERMSGRIPKSGPMRSGMLSRALYDEDDEDPLEDVDLPEEYKKDKLSTLTVLQWLSL IVILAALVCSLSIRDLKKVKILNLKLWKWEVLLLVLICGRLVSGWGIHLIVFFIERNFLLRKRVLYFVYGLRKGVQNCWWLGLVLLAWHFLFDKKVQRDT KSDFLEYVTKILVCFLVGNFIWLIKTLMVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLIEIQKAEDDVERIAAEVRKLQNAGVTMPAELKASVFP PAKSGRLNPNRVMQKTFTAKSFKFSGKLSQKGEKEADDGITIDHLHKLNTKNISAWNMKRLMKIVRHGSLSTLDEQILGAATEDESTTHIRSENEAKVAA RKIFNNVARHGSKYIYLHDLMRFLEEDQALKTMSFFEEASETSRIGKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHQMINAIVGIVIVVISLVILGI AKSKFFVLLGSQVLVVSFVFGNTAKTLFESIIFLFVIHPFDVGDRCEIDGVQLIVEEMNILTTFFLRADNQKVLYPNSVLATKPIGNYYRSPDMGDSVEF HIHICTPAEKVALMKQRITGYIEGKKEHWYPDPSFVFKELVDLNKMMVAVWIRHRMNHQDMAEKTKRRALLLEEMVKIFSELDIQYRLFPIDINIRAMPP LDKKYLLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78610		MSL6	mechanosensitive channel of sm...		Potri.004G178900 [exp]	0	1
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.001G370100 [exp]	5.65	0.9167	Pt-OPT1.1
					Potri.001G302201 [exp]	6.92	0.8995
AT4G16580			Protein phosphatase 2C family ...		Potri.001G089201 [exp]	7.93	0.8494
					Potri.001G422000 [exp]	13.07	0.8281
AT1G61850			phospholipases;galactolipases ...		Potri.011G000200 [exp]	13.41	0.8361
AT4G00590			N-terminal nucleophile aminohy...		Potri.014G080600 [exp]	18.00	0.8298
					Potri.003G214400 [exp]	22.00	0.7670
AT3G18670			Ankyrin repeat family protein ...		Potri.011G019200 [exp]	22.62	0.7869
AT1G11660			heat shock protein 70 (Hsp 70)...		Potri.011G139100 [exp]	23.23	0.7552
					Potri.004G166400 [exp]	46.78	0.8392

Compare expression of checked genes

Potri.004G178900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.