Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40820 3459 / 0 ATATR, ATRAD3, ATR ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) AT3G48190 274 / 3e-73 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) AT1G50030 179 / 2e-44 TOR target of rapamycin (.1.2) AT2G17930 98 / 8e-20 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) AT4G36080 94 / 1e-18 phosphotransferases, alcohol group as acceptor;binding;inositol or phosphatidylinositol kinases (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G076650 [exp] 243 / 1e-63 AT3G48190 3584 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.009G084500 [exp] 194 / 6e-49 AT1G50030 4038 / 0.0 target of rapamycin (.1.2) Potri.001G289200 [exp] 194 / 7e-49 AT1G50030 4080 / 0.0 target of rapamycin (.1.2) Potri.004G147800 [exp] 182 / 2e-45 AT1G50030 252 / 2e-66 target of rapamycin (.1.2) Potri.007G057850 [exp] 92 / 3e-18 AT2G17930 1074 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) Potri.005G114300 [exp] 90 / 3e-17 AT2G17930 6266 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023991 [exp] 3979 / 0 AT5G40820 3276 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) Lus10025091 [exp] 3672 / 0 AT5G40820 3033 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) Lus10019489 [exp] 239 / 2e-62 AT3G48190 3373 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10023840 [exp] 186 / 2e-46 AT1G50030 239 / 2e-62 target of rapamycin (.1.2) Lus10037246 [exp] 183 / 1e-45 AT1G50030 4101 / 0.0 target of rapamycin (.1.2) Lus10035661 [exp] 183 / 2e-45 AT1G50030 2590 / 0.0 target of rapamycin (.1.2) Lus10000064 [exp] 102 / 2e-24 AT3G48190 248 / 2e-76 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10028458 [exp] 94 / 2e-18 AT2G17930 6325 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) Lus10041911 [exp] 92 / 2e-18 AT2G17930 989 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) Lus10041910 [exp] 84 / 2e-15 AT2G17930 5862 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00454 [poplar] [flax] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase CL0020 [poplar] [flax] TPR PF02259 [poplar] [flax] FAT FAT domain CL0020 [poplar] [flax] PF02260 [poplar] [flax] FATC FATC domain CL0020 [poplar] [flax] PF08064 [poplar] [flax] UME UME (NUC010) domain
Representative CDS sequence Show only first row Show all	>Potri.004G179000.1 pacid=42794001 polypeptide=Potri.004G179000.1.p locus=Potri.004G179000 ID=Potri.004G179000.1.v4.1 annot-version=v4.1 ATGCCGACGCCGAACTTATCGAGCTTAGTGCACGAACTCCGAGAACGAATCGCAGCAACTTCATCAACGCCACCAAACACCAACACCAACACAGCAGCAG AAAACGACTCCGCTCTAGAAATCCGATTCCGTGCTGTCCTTCCTAATCTCCTTCACGCCTATGTCGTTCCTTCTTCATCCGCGAGCGAGCGAGAGGTGAT TGCGGTGTTGAAATTGATTTCACACATAGCGAGGAATTTTCCTGGCGTGTTTTACCATGGTAAAGGGAGTGCCATTTTGCCTGTTATTGGTAGGGTTTTG CCGTTTTTCGCAGAGCCTGCGTTTCGCGCGCGGCACGGAGTGATTTTTGATACCGTTGGATCTTTATTGTCCTTGCTTCGCACTGGAGCTCGAGATGCCT ACTGTCAGTTTTTTATTGATGCAATGCTGTCTGTTGAAGATATATTGTACGTGGCGTCGTTTTCTGTTGAGAATAGAAATGTTCCGGAATCTGGTAGAAT AATGTTGAAGTGTTTTTGCAAGTCATTTAGTGGGATTTTCGATGATCCTGCTTGTATTAGTGGTTTGCCGGCTAGTAGTAAACCTGATGATGGTGCGGGT GTTTTGATTAATGTGACGGGTACAGAGAGGTGGATGACTTTTGCGACTTGGATGGTTAAGCTTCTTAGCAAATGTGTGACTGAAGGGACGCTTTATGTGG AGGGACTCATTAGTTTGGCAAATGTTTCAGCTGCTTGTTCGCTGTTGTGTTTTGGAAATGCTGATTTGCATATGGCATGTTTTGACTTTGCCTGTGTCGT CACATCAGTCATAGATCATGATATTGTTCCTCATGAGAATATGATCAGGTCAATAGCTGCAATACTAAGTGAGGACAACGAGGGACCTTTTTTATTCAGA AACATGGTGTATGATTCATCCTTGGGCAGTTGCCTCAATATATTGCATTCCAGTTGTTCAGATGCTATTGTAGAGATAACAGCTGCAGGCTTGATAAATG TCTTTCCTCAGTCAATGCAGAGAACCAAAAGCCAAGAGCTCAAGGTAGCTTTGTGCCATTCATACTCACGGATTGCTAGAACATGCCCCCCTCATATTTG GAGGCCAGAATCTCTGATACAAATGCTTCGTTGTCCTGAACCCTTTTCTTCCTTGATTGATTGCTTTCATGTAGCTCTGTCCATTCTTGGTCCTGAACGT GTTGGAGGGAGGATGGAAAATAATGATGATGCAAGCTTATCAGTATCTGGTGATATAACAGTCCAGAACTCAAGTGTTGGCCAAAAGAGACATTCTCAGA ATGTGGATACTATACAGACCAAACGCCGTAAGGTAGATGACGATGTTATGGCTTCTGATCCCAGTGTTCTGGCAGAGTGCAAGCTTCATTCCATAGTTAA TTCTAAAAGAGAAGAAGAATATGCTGATTGTATGCATAAATCGCTTGTTTCATTCCTCAAACTTTTAAAGCCTCCTGCTAAACCTGATTCTTTAAGACCA GATGTTGCGCTAGCAGCTCTTAGCATGCTTTGCATTGCTTTCTGTAGATTTCCAACGACCTATCTGTCAATCTGTATCTTCCAGCAGATGCATGCGTGGA TTCCTTGGATATGTGAGCAGGCAGAGCGAGGAGGTTCAGTTGCACTTGATATTTCCAACTACCTGGAAGGAATTCACACCATGTTGCTTGTGCAAAGCCC CTTTCTCATGGAGGACAAGCCTTTCAAATTTAAGGGTGACAGTACAGATCTTATGCATATCGTGCTAAAGCTTCCTTGGACTCATCCACATATGGTTATT GGTCCGCATCCTCCTTGGAAGACAAAATGTTTCTCCATCCAAGTTGTCTCCAAGCTTGGTTCTATCTTAAAAACTGAACATGCTCTGGAACTCTTGGATT TGGGTCTCAATGATGAAGCTGAAGAAGTTAGAATTGAAACTATAACTTCTATGCCAGTGATTGTCTTGTGGTCTGGCCTTGGTTTGCAAGCAGAAATGTT CAAAAGGCTTGACTTGCTGGGGAAAGAGGAGAACATCAAAGTTAAGAGAAGCATTCCCTTCACTCTTGGTTTCTTGTCATGTTTTTACGGATCCTGTAGT ATTGTTGATGGCCCACCTCTAGGTGAATGCAAGTTATTTATAGATATCAATAATGAGAAACATGGCAAGACAACTGATTATTTACAAGGATTCTGGTGCT CAAAGTGTGACAGAAGCATTGTGCACAACCACAAGGTACACTTGAAAATAATGCAACCACCTGATTTCCAAAGTGCAAGAGTGGGATTGAATAGCAATTT TCCTCAGCTCCAGTCCATGTTCTTTAAACTTCTTTATGATGAGTCTTCGGAAGAGGTTCAAGTTGCCTGTGTGAGAATTATTCGACGTATCCTTGTACAT GGGTCTGAAGATATTTTAATTAAAACAAAATCTGAATGGATTAAATGTGTTGAGTTTTTACTACTGAACAAAAAGAAGGCACTGAGAGAGGCATTCTGCA CTCAGATCAGTTCCTTCCTTGAAAGTCCTGTACTCAGTTGTTTATTTTTGAATGGAGATTCATACAATAAAACTAATGAGCAGAAGTTTTTGGGCCTAAT GAAGCATGCTCTGTCAGCAGCTGAAGACCCACAAATCTTTGAGACTCTTCTGGAATGTGTATCCCAAATTATGATCGCAGTTGATATTCATAGTCAACTT TTCTTGTCTTGTCTTATTTTGTTGGTTGATCAGCTGGATCATCCACATGTGACAGTGAGAATGAGTGCATCAAGGTTAATACACAAATCTTGCTACTTTC ATCTTAAAGGAGGATTTGAGCTAATCCTTTCAAAAGTAGTTCACATCAGAAATGAGCTGTTTGATTATCTAACTATGAGGTTCACAAGCCATCCAAAAAT GGTCAGAGAGTTTGCAGAAGCTGTTTTTGGAGTTGAAACTGAAGAGCTTGTTGAGAAAATGATTCCCATTGTTCTTCCAAAGCTCGTGGTGTCTCAGCAG GATAACAATCGAGCAGTTCAGACATTATTTGAGTTAGCCAAGTGTTTAAACACTGACATGGTGCCTCTGATAGTTAATTGGCTACCAAAAGTGCTTGCCT TCGCTCTTCATCGAGCAGATAAGCAGGAGTTACTCTCAACTTTGCAGTTTTACCATGATCAGATTGGTTCGGATAACCAAGAAATTTTCGCAGCTGCATT ACCTGCACTTTTAGATGAACTTGTCTGCTTTCTTGATGGTGGTGATTCAGTTGAGATAAACCAAAGGTTATCAAGAGTGCCTGACATGATAAAAGAAATT GCCAGAGTTCTGACAGGTGGTGAAGATCTACCAGGCTTTCTGAGGAATCATTTTGTTGGTCTCCTTAATGGCATTGATAGAAAAATGCTTCATGCAGAGG ATCTTTTGCTGCAGAAACAAGCTTTGCGACGTATTAAAATGCTAATTGAAATGATGGGATCACAGCTTGGTACTTATGTGCCAAAATTAATGGTCCTTCT TATGCATGCTATTGATAAAGAATCACTGCAAAATGAGGGTCTATCCGTCTTGCACTTTTTCATAGAGCAATTGGCAAACAAGTCACCATCTAGCACTAAA CATGTCATTTCTCAAGTTTTTGCTGCCCTTATTCCCTTCTTGGAGAGATACAAAGAAAATCCTTCTACACATTTGAACAAAGTAGTGAACATTTTGGAAG AACTTGTGTTAAAGAACAGAACCATCCTGAAGCAGCATATTCATGAATTTCCTCTATTACCTAGTATTCCTGAGCTAATGGAAGTGAACAAAGCTATTCA AGAAGCACGTGGGTCAATGACTTTGAAGGATCAATTGCGAGATGTTGTTGATGGTCTTAACCATGAGAACTTGAATGTTAGGTATATGGTGGTGTGTGAG TTAAGCAAGTTACTGAATCTGAGAAGGGGAGATATTACATCTCTGATCACTGGTGAAGTTGCTGCTGATATGGACATTTTGAGCTCGTTGATCACAGCCT TACTCAGAGGATGTGCAGAAGAATCAAGGACTGCAGTAGGACAGCGGCTGAAGTTGGTCTGTGCTGATTGTCTCGGAGCATTGGGTGCGGTTGACCCTGC TAAAGTAAAGGGAATTTCATCCCAGCGCTTTAAAATTGAATGTTCAGATGATGATCTTATCTTTGAGCTGATCCACAAACATTTGGCTAGGGCTTTTAGA GCTGCACCTGATACCATTGTTCAGGACTCAGCTGCACTGGCAATTCAAGAATTGCTTAAGATTGCAGGTTGTGAGGCATCACTGGATGGGACTACTTCCC TGTCACAAACCCTGAAGGACAAGAGTACTAAAAGTAGTAGTGGAATGAATACGAGGGGTCAGAGATTGTGGGACCGATTCTCTAATTATGTCAAAGAGAT AATAGCCCCTTGTTTAACCTCTAGATTTCAGCTTCCAAATGTGGCTGACTCAGCATCAGTCGGGCCAATTTACCGGCCTTCCATGTCATTCAGAAGATGG ATATTCTATTGGATAAAGAAACTTACTGCACATGCAACCGGATCTCGTGCAAGTATATTTAATGCTTGTAGAGCTCTAGTGCGGCATGATATGCAACTAG CAATTTATCTGCTGCCATATTTAGTTCTCAATGCTGTTTGTCATGGTACTGAGGAGGTGCGCCACAGCATAGCTGAGGAAATCCTATGTGTTCTTGATGC TGCTGCATCAGACAACAGTGGTGCTGCAGTTGGTGGGCAAAGTGAAGTTTGTATTCAAGCTGTTTTCACTCTCCTGGATAATCTTGGGCAATGGATGGAT GATTTTGAACAAGAGTTAGCTCTTTCCCAATCTTTCCAATCACCTGCATCTAAGAAACAAGCATCCAAATCCAAGGGTCAAGGTTCAATTTCTTCGACAG ATCAGGATCAACTCCTTGTACAGTGTAAGTATGTTTCAGAACTTTTAACTGCAATTCCAAAGCTAACACTTGCCAGGGCCTCCTTCAGGTGTCAGGCTTA TGCAAGATCTTTGATGTACTTTGAGTCTCATGTGCGTGGAAAATCTGGCGCATTTAACCCAGCAGCTGAGAGAAGTGGCATATTTGAGGATGAAGATGTT TCATATTTGATGGAAATATACAGCTGCCTAGATGAGCCTGATGGTCTATCTGGCTTGGCATGTCTACGCAAATCATTAAGCTTGCAAGACCAGCTCTTAA TAAATAAAAGAGCAGGAAACTGGGCTGAGGTTTTAACTTCTTGTGAGCAGGCTTTACAGATGGAGCCCTGTTCTGTTCAGCGGCATTCAGATGTCCTTAA CTGTTTGCTGAACATGTGCCACCTTCAGGCTATGGTCACTCATGTGGATGGTTTAATTTCTAGGGTTCCACAATACAAGAAAACATGGTGCATGCAAGGT GTGCAAGCAGCATGGAGGCTGGGCAGGTGGGACTTGATGGATGAGTACATCAGCGGGGCTGATCATGATGGTTTACTTTGTAGTGGTTCTGAAAGTAATG CTTCCTTTGACATGGATGTTGCAAAGATTCTCCAGTCTATGATGAAGAAGGATCAGTTCTCAGTTGCTGAGAAGATTGCACTATCCAAACAAGCTCTGAT TGCTCCTCTTGCTGCTGCTGGCATGGATTCTTACGTGCGGGCTTACCCATTTATCGTGAAACTTCACTTACTACGTGAATTGGAGGCCTTCCACACTCTT CTTGTTGATGATTCTTTCTTGGTCAAAAAATTCCATCTGGGTCATCTAGAATTCACTAAATTGATGGAGAATTGGGAACATCGGCTCAGATTTACTCAAC CATCCCTTTGGGCAAGGGAGCCTCTTTTGGCTTTCCGAAGATTGGTATTTGGTGCCAGTAGTCTCGGTGCCCATGTTGGGATCTGCTGGCTTCAGTATGC AAAGCTTTGTCGCTTGGCTGGTCACTATGAGACAGCAAACCGAGCAATTCTCGAAGCCCAGGCCTCGGGTGCACCTAATGTTCACATGGAAAAGGCCAAG CTTCTGTGGAGTACTAGGCGATCAGATGGTGCCATTGCAGAGTTGCAGCAAACTCTCCTTCACATGCCTGAAAAGGTTGTAGGTGCTGCTGCTAGGTCTT CAATTACTAGCCTTTCATTGGTTCCATTGAATCCCCAACCTGCATTTTGTGATACTCAAGCTTCGAGTGAGAATCTAGATATTGCAAAGACTCTACTTTT ATATTCCAGATGGATCCATTATACGGGTCAGAAACAAAAGGAAGATGTCATAACTCTTTATACCAGGGTGAGGGATCTGCAGCCTAAGTGGGAAAAAGGA TTCTTCTATTTGGCTAGATATTGTGATGAGGTGCTTGTTGATGCCAGGAAACGTCAGGAAGACAATTATGAACTAGGTCCCAGACTGGTACCATTGACTT CCACTTCTATTTCTCCTTCAAACACTGAGAGGCGATGGTGGACTTCCGCACCTGATGTACTTTTATTCTATGCTAAGGGGCTGCATAGGGGCCACAAGAA TCTCTTTCAAGCTCTTCCAAGATTGCTAACACTGTGGTTTGAATTTGGAAGCATTTATCAAAGATGTGGCTCATCGTCCAATCAAGAGTTGAAAAAGGTT CATGACAAGGTTATGAGTATTATGCGAGGCTGTTTGAAGGATTTGCCAACATATCAATGGTTAACAGTGCTGCCTCAATTAGTTTCTAGAATCTGCCACC AGAATGAAGATATTGTAAAGTTGGTCAAACGCATAATCACCTCTGTTATCCAGCAATACCCACAACAAGGCCTATGGATTATGGCAGCTGTTTCAAAATC TGCAGTCCCTTCAAGGCGGGAAGCGGCTGCAGCAATCATACAAGAAGCTAAAAAGGGGTTCAGCCAAGGAAACAATGGGAGCAATTTGTTTGTTCAGTTT GCTAGCTTGATTGATCATCTTATCAGATTGTGTTTCCACCCAGGCCAATCAAAAGCAAGGACTATTAATATTTCAACTGAATTCAGTGCCCTGAAAAGGA TGATGCCACTGGAAATTATCATGCCAATTCAACAATCTCTCACTGTTAGTTTACCAACGTATGATGTGAATCTCACCGACCCCCTTACCTCTGTTATCTT TTCTGCTTCTGATCTTCCAACAATTTCAGGAATAGCTGACGAGGCTGAGATTCTTTCATCTCTTCAGCGACCTAAAAAAATTGTTCTGTTGGGTAGTGAC GGTATTGAACACCCATTCCTTTGCAAGCCCAAGGATGACCTTAGGAAAGATGCTCGTATGATGGAGTTCACTGCAATGATAAACCGGTTGTTGTCAAAAT ATCCTGAAAGCCGTCGGAGGAAACTTTACATTCGTACTTTTGCTGTAATTCCACTAACAGAAGACTGCGGTATGGTGGAATGGGTGCCCCACACCCGTGG ACTCCGGCATATACTTCAAGACATATATATAAAATGTGGGAAATTTGACAGGCAGAAGACGAATCCTCAAATTAAACGGATCTATGATCAATGCCATGGT AAAATGCCAGAAGATGAGATGCTAAAAAATAAGATCCTTCCATTGTTCCCTCCAGTTTTCCACAAATGGTTCTTGACCACTTTTTCTGAGCCAGCTGCTT GGTTTAGGGCTCGGGTTGCTTATGCTCATACCACTGCAGTTTGGTCGATGGTTGGGCATATCGTGGGACTAGGAGATCGACATGGTGAAAACATTCTCTT TGACTCCACCACAGGTGATTGTGTCCATGTTGATTTCAGTTGTCTATTTGACAAAGGCTTGCAGTTGGAAAAACCTGAGCTAGTGCCTTTCAGGTTAACA CAGAACATGATTGATGGCTTGGGCATCACGGGTTACGAGGGCATTTTCTTGAGGGTATGTGAAATCACTCTTTCAGTTCTGAGGACACACAGGGAAACTT TAATGAGTGTTCTTGAAACTTTCATTCACGATCCTCTTGTGGAGTGGACAAAATCTCACAAATCCAGCGGGGTTGAAGTTCAGAACCCACATGCACAGCG AGCCATTAATAATATCGAAGCAAGGTTGCAAGGGGTGGTTGTTGGCGTTGGAGCGGCACCCTCTTTGCCTCTTGCCGTGGAAGGCCAGGCTCGTCGTTTA ATTGCTGAAGCAGTGTCGCACAAAAATCTTGGGAAGATGTACATATGGTGGATGCCTTGGTTTTGA
AA sequence Show only first row Show all	>Potri.004G179000.1 pacid=42794001 polypeptide=Potri.004G179000.1.p locus=Potri.004G179000 ID=Potri.004G179000.1.v4.1 annot-version=v4.1 MPTPNLSSLVHELRERIAATSSTPPNTNTNTAAENDSALEIRFRAVLPNLLHAYVVPSSSASEREVIAVLKLISHIARNFPGVFYHGKGSAILPVIGRVL PFFAEPAFRARHGVIFDTVGSLLSLLRTGARDAYCQFFIDAMLSVEDILYVASFSVENRNVPESGRIMLKCFCKSFSGIFDDPACISGLPASSKPDDGAG VLINVTGTERWMTFATWMVKLLSKCVTEGTLYVEGLISLANVSAACSLLCFGNADLHMACFDFACVVTSVIDHDIVPHENMIRSIAAILSEDNEGPFLFR NMVYDSSLGSCLNILHSSCSDAIVEITAAGLINVFPQSMQRTKSQELKVALCHSYSRIARTCPPHIWRPESLIQMLRCPEPFSSLIDCFHVALSILGPER VGGRMENNDDASLSVSGDITVQNSSVGQKRHSQNVDTIQTKRRKVDDDVMASDPSVLAECKLHSIVNSKREEEYADCMHKSLVSFLKLLKPPAKPDSLRP DVALAALSMLCIAFCRFPTTYLSICIFQQMHAWIPWICEQAERGGSVALDISNYLEGIHTMLLVQSPFLMEDKPFKFKGDSTDLMHIVLKLPWTHPHMVI GPHPPWKTKCFSIQVVSKLGSILKTEHALELLDLGLNDEAEEVRIETITSMPVIVLWSGLGLQAEMFKRLDLLGKEENIKVKRSIPFTLGFLSCFYGSCS IVDGPPLGECKLFIDINNEKHGKTTDYLQGFWCSKCDRSIVHNHKVHLKIMQPPDFQSARVGLNSNFPQLQSMFFKLLYDESSEEVQVACVRIIRRILVH GSEDILIKTKSEWIKCVEFLLLNKKKALREAFCTQISSFLESPVLSCLFLNGDSYNKTNEQKFLGLMKHALSAAEDPQIFETLLECVSQIMIAVDIHSQL FLSCLILLVDQLDHPHVTVRMSASRLIHKSCYFHLKGGFELILSKVVHIRNELFDYLTMRFTSHPKMVREFAEAVFGVETEELVEKMIPIVLPKLVVSQQ DNNRAVQTLFELAKCLNTDMVPLIVNWLPKVLAFALHRADKQELLSTLQFYHDQIGSDNQEIFAAALPALLDELVCFLDGGDSVEINQRLSRVPDMIKEI ARVLTGGEDLPGFLRNHFVGLLNGIDRKMLHAEDLLLQKQALRRIKMLIEMMGSQLGTYVPKLMVLLMHAIDKESLQNEGLSVLHFFIEQLANKSPSSTK HVISQVFAALIPFLERYKENPSTHLNKVVNILEELVLKNRTILKQHIHEFPLLPSIPELMEVNKAIQEARGSMTLKDQLRDVVDGLNHENLNVRYMVVCE LSKLLNLRRGDITSLITGEVAADMDILSSLITALLRGCAEESRTAVGQRLKLVCADCLGALGAVDPAKVKGISSQRFKIECSDDDLIFELIHKHLARAFR AAPDTIVQDSAALAIQELLKIAGCEASLDGTTSLSQTLKDKSTKSSSGMNTRGQRLWDRFSNYVKEIIAPCLTSRFQLPNVADSASVGPIYRPSMSFRRW IFYWIKKLTAHATGSRASIFNACRALVRHDMQLAIYLLPYLVLNAVCHGTEEVRHSIAEEILCVLDAAASDNSGAAVGGQSEVCIQAVFTLLDNLGQWMD DFEQELALSQSFQSPASKKQASKSKGQGSISSTDQDQLLVQCKYVSELLTAIPKLTLARASFRCQAYARSLMYFESHVRGKSGAFNPAAERSGIFEDEDV SYLMEIYSCLDEPDGLSGLACLRKSLSLQDQLLINKRAGNWAEVLTSCEQALQMEPCSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRVPQYKKTWCMQG VQAAWRLGRWDLMDEYISGADHDGLLCSGSESNASFDMDVAKILQSMMKKDQFSVAEKIALSKQALIAPLAAAGMDSYVRAYPFIVKLHLLRELEAFHTL LVDDSFLVKKFHLGHLEFTKLMENWEHRLRFTQPSLWAREPLLAFRRLVFGASSLGAHVGICWLQYAKLCRLAGHYETANRAILEAQASGAPNVHMEKAK LLWSTRRSDGAIAELQQTLLHMPEKVVGAAARSSITSLSLVPLNPQPAFCDTQASSENLDIAKTLLLYSRWIHYTGQKQKEDVITLYTRVRDLQPKWEKG FFYLARYCDEVLVDARKRQEDNYELGPRLVPLTSTSISPSNTERRWWTSAPDVLLFYAKGLHRGHKNLFQALPRLLTLWFEFGSIYQRCGSSSNQELKKV HDKVMSIMRGCLKDLPTYQWLTVLPQLVSRICHQNEDIVKLVKRIITSVIQQYPQQGLWIMAAVSKSAVPSRREAAAAIIQEAKKGFSQGNNGSNLFVQF ASLIDHLIRLCFHPGQSKARTINISTEFSALKRMMPLEIIMPIQQSLTVSLPTYDVNLTDPLTSVIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSD GIEHPFLCKPKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRHILQDIYIKCGKFDRQKTNPQIKRIYDQCHG KMPEDEMLKNKILPLFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLQLEKPELVPFRLT QNMIDGLGITGYEGIFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVQNPHAQRAINNIEARLQGVVVGVGAAPSLPLAVEGQARRL IAEAVSHKNLGKMYIWWMPWF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Potri.004G179000 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261600 [exp]	2.82	0.8878	RGA.64
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	3.31	0.9014
AT4G27190			NB-ARC domain-containing disea...		Potri.001G426200 [exp]	4.24	0.8862
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.013G129100 [exp]	6.00	0.8851
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.019G075900 [exp]	6.00	0.8603
AT2G47310			flowering time control protein...		Potri.002G192900 [exp]	6.16	0.8553	FCA.3
AT2G26100			Galactosyltransferase family p...		Potri.018G053150 [exp]	10.48	0.8717
AT4G17610			tRNA/rRNA methyltransferase (S...		Potri.001G150900 [exp]	10.77	0.8439
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Potri.003G039475 [exp]	10.90	0.8671
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283200 [exp]	11.83	0.8616

Compare expression of checked genes

Potri.004G179000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.