Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38470 655 / 0 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 612 / 0 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 577 / 0 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G31170 281 / 4e-91 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 268 / 6e-86 Protein kinase superfamily protein (.1) AT1G62400 259 / 1e-83 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT5G01850 244 / 1e-77 Protein kinase superfamily protein (.1) AT5G58950 238 / 6e-73 Protein kinase superfamily protein (.1) AT5G50180 227 / 6e-71 Protein kinase superfamily protein (.1) AT5G49470 227 / 2e-69 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G179514 [exp] 865 / 0 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 784 / 0 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 736 / 0 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 621 / 0 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 591 / 0 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 561 / 0 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G015400 [exp] 551 / 0 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G070000 [exp] 446 / 9e-154 AT4G38470 498 / 1e-171 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G190200 [exp] 445 / 3e-153 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023989 [exp] 731 / 0 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 721 / 0 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10022653 [exp] 697 / 0 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 695 / 0 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10041845 [exp] 595 / 0 AT4G35780 791 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10004153 [exp] 523 / 3e-174 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10018895 [exp] 445 / 2e-153 AT4G35780 508 / 1e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10028590 [exp] 444 / 1e-152 AT4G35780 506 / 9e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10028392 [exp] 427 / 1e-148 AT4G35780 445 / 2e-153 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10005630 [exp] 399 / 5e-136 AT4G38470 514 / 8e-179 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G179457.1 pacid=42794577 polypeptide=Potri.004G179457.1.p locus=Potri.004G179457 ID=Potri.004G179457.1.v4.1 annot-version=v4.1 ATGCATCCACCGCCAGCCTTTGGTTCATCACCTAATCTTGAAGCACTGGCACTTGAAGCAAATAAATTTGATGATCAAGATGGTGATAATTCTGTGTGTG CTGATTCAAAGTTCTTCAGGCCCATGCATGAAATTACTTTTTCAACTGAGGACAAGCCAAAACTCCTGAGTCAGCTGGCTGACTTAGTTGCTGACATTGG GTTGAACATCCAAGAAGCGCACGCATTTTCGACAGTTGATGGCTACTCCTTGGATGTATTTGTTGTTGATGGTTGGCCATATGAGGAAACGGAGCAGCTC AGAGAAGCGTTGGCAAAGGAAGTTTCCAAGATTGAGGATCGCGAGCAATTTAGGATCAAATACGAAACTAATCATGTTGCAATACCCAATGACGGGACTG ATGTGTGGGAAATTGATCCTAAATATTTGAAGTTTGAGAACAAAGTTGCCTCTGGATCATACGGTGATCTGTACAAAGGTACATACTGTAGTCAGGAAGT GGCTATCAAAATTCTCAAGCCTGAGCGAGTAAATTCAGACTTGCAGAAAGAATTCGCCCAAGAAGTTTACATAATGAGGAAAGTTCGACATAAGAATGTC GTACAATTTATCGGTGCATGCACCAAGCCTCCAAGTTTGTGCATTGTAACAGAATTCATGCACGGAGGAAGTGTCTATGACTACCTACACAAGCAGAGGG GTGTTTTTAAGCTGCCAAATTTACTTAAAGTAGCAATAGATGTTTCTAAAGGAATGGATTACTTGCACCAAAATAATATAATCCATAGGGATTTGAAGGG TGCAAATCTTCTCATGGATGAAAATGAAGTAGTCAAGGTTGCTGATTTTGGTGTTGCCAGAGTGAAAGCTCAGACTGGAATTATGACTGCGGAAACTGGG ACCTATAGATGGATGGCTCCTGAGGTCATTGAGCACAAGCCGTATGACCATAAGGCTGACGTATTTAGTTTTGGGATCGTGTTATGGGAGTTGTTAACTG GAAAGATTCCATATGAATACTTAACCCCTTTACAAGCAGCTGTTGGAGTGGTTCAAAAGGGTCTACGGCCTACCATACCCAAGAATACTCAACCAAAGCT TGCCGAACTGCTAGAAAAATGCTGGCAACAGGATCCAGCTCTAAGGCCTGACTTCTCGGAGATTATAGAGATCCTGCAACAAATAGCAAAAGAGGTTGGG GATTGTGGTGAATGGCGCAAGGAGAAATCGTCTGGCCGATTTCTATCTGTGCTCAGGAGGAAGTAA
AA sequence Show only first row Show all	>Potri.004G179457.1 pacid=42794577 polypeptide=Potri.004G179457.1.p locus=Potri.004G179457 ID=Potri.004G179457.1.v4.1 annot-version=v4.1 MHPPPAFGSSPNLEALALEANKFDDQDGDNSVCADSKFFRPMHEITFSTEDKPKLLSQLADLVADIGLNIQEAHAFSTVDGYSLDVFVVDGWPYEETEQL REALAKEVSKIEDREQFRIKYETNHVAIPNDGTDVWEIDPKYLKFENKVASGSYGDLYKGTYCSQEVAIKILKPERVNSDLQKEFAQEVYIMRKVRHKNV VQFIGACTKPPSLCIVTEFMHGGSVYDYLHKQRGVFKLPNLLKVAIDVSKGMDYLHQNNIIHRDLKGANLLMDENEVVKVADFGVARVKAQTGIMTAETG TYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKIPYEYLTPLQAAVGVVQKGLRPTIPKNTQPKLAELLEKCWQQDPALRPDFSEIIEILQQIAKEVG DCGEWRKEKSSGRFLSVLRRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.004G179457 [exp]	0	1
					Potri.004G068650 [exp]	8.66	0.8418
					Potri.006G228650 [exp]	9.59	0.9318
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Potri.011G022150 [exp]	10.95	0.8142
AT2G27250		AtCLV3, CLV3	CLAVATA3 (.1.2.3)		Potri.009G020300 [exp]	11.13	0.8140
					Potri.012G134051 [exp]	11.74	0.9318
AT5G12460			Protein of unknown function (D...		Potri.001G256200 [exp]	12.68	0.9318
					Potri.003G054301 [exp]	13.56	0.9318
AT1G78720			SecY protein transport family ...		Potri.011G114900 [exp]	15.16	0.9318
AT5G15948		CPuORF10	conserved peptide upstream ope...		Potri.017G108901 [exp]	16.61	0.9318
					Potri.011G074033 [exp]	20.34	0.9317

Compare expression of checked genes

Potri.004G179457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.