Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38460 403 / 2e-141 GGR geranylgeranyl reductase (.1) AT4G36810 274 / 6e-90 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 256 / 4e-83 Terpenoid synthases superfamily protein (.1) AT2G18640 236 / 3e-75 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT2G23800 234 / 2e-74 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT3G20160 228 / 2e-72 Terpenoid synthases superfamily protein (.1) AT3G14530 218 / 5e-68 Terpenoid synthases superfamily protein (.1) AT3G14550 217 / 6e-68 GGPS3 geranylgeranyl pyrophosphate synthase 3 (.1) AT3G14510 214 / 7e-68 Polyprenyl synthetase family protein (.1) AT3G29430 213 / 2e-66 Terpenoid synthases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139600 [exp] 616 / 0 AT4G38460 389 / 7e-136 geranylgeranyl reductase (.1) Potri.017G124700 [exp] 273 / 1e-89 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 255 / 2e-82 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.005G127100 [exp] 254 / 3e-82 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.004G090600 [exp] 253 / 1e-81 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124600 [exp] 230 / 5e-73 AT4G36810 388 / 2e-134 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.015G043400 [exp] 158 / 1e-45 AT4G38460 121 / 4e-32 geranylgeranyl reductase (.1) Potri.001G380500 [exp] 71 / 2e-13 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.010G138800 [exp] 62 / 1e-10 AT2G34630 551 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025096 [exp] 467 / 2e-166 AT4G38460 381 / 5e-133 geranylgeranyl reductase (.1) Lus10028509 [exp] 258 / 2e-83 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10016803 [exp] 253 / 1e-81 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 244 / 3e-78 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10022499 [exp] 242 / 3e-77 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017624 [exp] 240 / 1e-75 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017625 [exp] 237 / 1e-75 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009138 [exp] 225 / 8e-71 AT4G36810 373 / 2e-128 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028507 [exp] 224 / 1e-70 AT4G36810 375 / 2e-129 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10033582 [exp] 172 / 3e-52 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [poplar] [flax] Terp_synthase PF00348 [poplar] [flax] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Potri.004G179628.1 pacid=42795719 polypeptide=Potri.004G179628.1.p locus=Potri.004G179628 ID=Potri.004G179628.1.v4.1 annot-version=v4.1 ATGGTGGTATCTTCTCTTATAGCAATATCATCACCACTTACTACTACTATCTACCTCCCTGTAAAAAGCCCAAATCTTTACACTAAAATACTTGGCAAAA TGTCAAAAATTCAATGTTCTTTATCAGTTTCAAGCCAATCAAAGACAGCGCAGTTTGATTTAAAGACTTATTGGACAACCTTGATTGGAGAAATCAATCA GGAACTAGACCAAGCTGTTCCTATTCAGTATCCAGATAAGATTTATGAGGCCATGAGGTATTCTGTTCTTGCAAAAGGTGCTAAAAGAGCCCCTCCAGTT ATGTGTGTTGCTGCTTGTGAACTCTTTGGTGGTAATCGCCTCGCCGCCTTCCCTACTGCTTGTGCTCTTGAAATGGTTCATGCAGCTTCGTTGATCCATG ACGACCTTCCCTGCATGGATGATGACCCATCACGACGAGGTCAACCTTCAAACCACACAATTTATGGTGTTGATATGGCAATCCTTGCTGGGGATGCGCT CTTCCCTCTTGGCTTTAGCCATATTGTCTCCCAGACGCCTTCTGACCTTGTACCAGAGCCACGACTTCTCCGCGTGATTGCTGAGATTGCTCGTGCTGTG GGGTCCAGAGGCATGGCTGCCGGGCAGTTCCTAGACCTTGAGGGCGGCCCTAATGCTGTTGAATTTGTTCAAGAGAAGAAATATGGTGAAATGGGTGAGT GCTCTGCAGTGTGTGGAGGATTGCTAGCTGGTGCTACGGATGATGAGATACGGAGATTGAGGAGATATGGAAGAGCTGTTGGTGTATTATATCAAGTCGT TGATGACATCTTGGAAGCAAAAACGATGAAGAGCAAGTTAGATGAGGAGGAGAAGAGAAAGAAAGGGAAGAGCTATGTTGCTGTTTACGGGGTTGAGAAG GCTACAGAGGTGGCGGAGGAGCTGAGAGCCAAGGCTAAAAAGGAACTGGATGGCTTTGAGAAATACGGCGAGAGTGTAGTGCCACTCTACAGCTTCGTGG ACTACGCTGCTGATAGAGGTTTCAGTTTTGGCGAGTCAATTTAA
AA sequence Show only first row Show all	>Potri.004G179628.1 pacid=42795719 polypeptide=Potri.004G179628.1.p locus=Potri.004G179628 ID=Potri.004G179628.1.v4.1 annot-version=v4.1 MVVSSLIAISSPLTTTIYLPVKSPNLYTKILGKMSKIQCSLSVSSQSKTAQFDLKTYWTTLIGEINQELDQAVPIQYPDKIYEAMRYSVLAKGAKRAPPV MCVAACELFGGNRLAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTIYGVDMAILAGDALFPLGFSHIVSQTPSDLVPEPRLLRVIAEIARAV GSRGMAAGQFLDLEGGPNAVEFVQEKKYGEMGECSAVCGGLLAGATDDEIRRLRRYGRAVGVLYQVVDDILEAKTMKSKLDEEEKRKKGKSYVAVYGVEK ATEVAEELRAKAKKELDGFEKYGESVVPLYSFVDYAADRGFSFGESI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38460		GGR	geranylgeranyl reductase (.1)		Potri.004G179628 [exp]	0	1
AT4G21210		ATRP1	PPDK regulatory protein (.1.2)		Potri.004G022900 [exp]	3.46	0.8847
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Potri.012G124500 [exp]	4.00	0.9120
AT4G19950			unknown protein		Potri.007G105700 [exp]	6.70	0.8567	ORF.6
AT4G35360			Uncharacterised conserved prot...		Potri.009G169000 [exp]	7.87	0.8374
AT1G48420		DCD, ATACD1, AC...	A. THALIANA 1-AMINOCYCLOPROPAN...		Potri.012G038900 [exp]	9.53	0.8593
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.016G031700 [exp]	10.39	0.8789	Pt-CYP94.6
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Potri.006G133500 [exp]	22.97	0.8139
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Potri.003G222800 [exp]	24.73	0.8555
AT5G64460			Phosphoglycerate mutase family...		Potri.009G080300 [exp]	24.89	0.8624
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Potri.017G073000 [exp]	27.49	0.8987

Compare expression of checked genes

Potri.004G179628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.