Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G17036 244 / 5e-76 F-box family protein with a domain of unknown function (DUF295) (.1) AT5G60060 140 / 2e-37 Protein of unknown function (DUF295) (.1) AT5G24040 140 / 2e-37 Protein of unknown function (DUF295) (.1), Protein of unknown function (DUF295) (.2) AT1G65770 133 / 1e-34 AMR1 ascorbic acid mannose pathway regulator 1 (.1) AT2G16290 127 / 5e-32 F-box family protein with a domain of unknown function (DUF295) (.1) AT3G25750 115 / 2e-28 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G26160 114 / 6e-28 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G35733 105 / 5e-25 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G44080 105 / 8e-25 F-box family protein with a domain of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G140000 [exp] 744 / 0 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G014500 [exp] 189 / 4e-55 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105400 [exp] 187 / 1e-54 AT1G65770 148 / 8e-41 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105200 [exp] 180 / 8e-52 AT1G65770 132 / 4e-35 ascorbic acid mannose pathway regulator 1 (.1) Potri.001G277400 [exp] 167 / 4e-47 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105000 [exp] 160 / 2e-45 AT1G65770 124 / 8e-33 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105100 [exp] 157 / 3e-43 AT1G65770 135 / 3e-36 ascorbic acid mannose pathway regulator 1 (.1) Potri.002G015700 [exp] 83 / 3e-17 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1) Potri.004G134900 [exp] 75 / 2e-14 AT4G17565 99 / 8e-23 F-box family protein with a domain of unknown function (DUF295) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025100 [exp] 519 / 0 AT2G17030 335 / 4e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10023984 [exp] 518 / 0 AT2G17030 336 / 2e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10021517 [exp] 174 / 2e-49 AT2G17030 166 / 2e-47 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10041838 [exp] 173 / 5e-49 AT1G65770 147 / 2e-40 ascorbic acid mannose pathway regulator 1 (.1) Lus10028385 [exp] 142 / 1e-37 AT1G65770 116 / 4e-29 ascorbic acid mannose pathway regulator 1 (.1) Lus10012519 [exp] 128 / 1e-33 AT2G17030 115 / 2e-29 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10022618 [exp] 116 / 3e-29 AT2G17030 117 / 3e-30 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10022650 [exp] 107 / 9e-26 AT2G17030 96 / 4e-22 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10029350 [exp] 63 / 5e-11 AT4G22060 45 / 3e-05 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10008665 [exp] 49 / 6e-06 AT5G55150 63 / 9e-11 Protein of unknown function (DUF295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0271 [poplar] [flax] PF03478 [poplar] [flax] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Potri.004G179685.1 pacid=42794209 polypeptide=Potri.004G179685.1.p locus=Potri.004G179685 ID=Potri.004G179685.1.v4.1 annot-version=v4.1 ATGGCAGAATGGACCCATCTACCAAAAGACCTCATGGAACTAATCTCCAAACGCCTAGACACCTCCACAGACCTCCTCCGTTTCCGTTCCGTCTGCAATT CATGGCGATCCTCAATCCCCCCTGAACCTCCCTGTTTATCTTCAAACACCTTCAAGATCCTCCCTAACGACGGTATCTCCCACACCTCTTTTGGGTTTTC TCTGTTCAAGCGAACTGTGTTCCTTGTTGGGTTACCGAATTCCCATAACCAAACAGACACACAAGGCTGGCTTATCAAAATCGAAGAAGATGTGCCTGGT AAGAAACACTTGTTTGATCCTTTATCGCGGTGCAGGTCAACTTCTTTGCCTAATAATCTTCCTCGTGTTCTAGATTTAATGAATCTAAGAATTCGTGAAT TGGGTCATGAATATGTTTTGCATCATCTTAATTATAAGCCGAATTCGTCTAGTTTTACTGATGCCGGTAATTTATATATGGAGAAAGTTGTGATGATTTG GTTAAATTCCTTAACCGAGTTTGTATTGTTAACTATTCATGTTTCTGGAAAATTGGCCATCTTTAAGAGTGGGGATAAGAGATGGACTATTATTAATGAA ATGCCATCGCCTTTTGATGATGTTATTGTTTATAAAGGGAGGTTTTATGCTGTGGATAATACGGGGAGGACTGTGGTAGTTGCAATGGATACGAATTTGG GTTTAGTTGGGAATCCGGTTTTTGGTGGGGATAAGAAGTATTTGGTTGAGTCGAAGGGGGATTTGTTGTTGGTTGATATGTATTTGAGTATTGATTCTGA TGAAGGGTTGAGTATCGGTCATGATGTTGTGCAGGATCTTGTTCAGTATATGAGTGAGAGGACGGTTTGGTTTAAGGTTTTTAAGTTGAATGAAGAAGGG AAATGTTGGATTGAGGTGAATGATTTGGAAGATCGCGTGTTGTTTTTAGGTGATGATTTGACGTTTTCTGCATCGGCTTCTGAGCTTTCTGGGTGTAAAG GGAATTGTATCTTTTTCAATGATGATTTCTTTTATTCAAGGGGGGAAGGAGATGATGGATCATTGTTTGGTCGTGATATAGGTGTGTTTGAATTGGAGAG TGGTTGTATAGGACCTTTAAGAAATTTTCCTGATAATTCCAAGATGTTCTGGCCACCTCCTGATTGGGTTGCTTCAACCTCATTGGAAGTAAGTCTTCAT TTTCCCCCCAGTATTACTGTTTACATGAAGTTTCAATTTTATCTTCGCATGCTAGCTTTATCCTACTTGGATTTTGCTATTTACTTCCATAGGTCTCTCA ATTTGTTCGGTATGCAGTTTGGATATGTTTTAAATATTCATGTCTTGATAGTTGTAGTTGCACTGAACTTGGCATTTAATTGGGAGGGGCTCATAGTTGC ACTTCCATAA
AA sequence Show only first row Show all	>Potri.004G179685.1 pacid=42794209 polypeptide=Potri.004G179685.1.p locus=Potri.004G179685 ID=Potri.004G179685.1.v4.1 annot-version=v4.1 MAEWTHLPKDLMELISKRLDTSTDLLRFRSVCNSWRSSIPPEPPCLSSNTFKILPNDGISHTSFGFSLFKRTVFLVGLPNSHNQTDTQGWLIKIEEDVPG KKHLFDPLSRCRSTSLPNNLPRVLDLMNLRIRELGHEYVLHHLNYKPNSSSFTDAGNLYMEKVVMIWLNSLTEFVLLTIHVSGKLAIFKSGDKRWTIINE MPSPFDDVIVYKGRFYAVDNTGRTVVVAMDTNLGLVGNPVFGGDKKYLVESKGDLLLVDMYLSIDSDEGLSIGHDVVQDLVQYMSERTVWFKVFKLNEEG KCWIEVNDLEDRVLFLGDDLTFSASASELSGCKGNCIFFNDDFFYSRGEGDDGSLFGRDIGVFELESGCIGPLRNFPDNSKMFWPPPDWVASTSLEVSLH FPPSITVYMKFQFYLRMLALSYLDFAIYFHRSLNLFGMQFGYVLNIHVLIVVVALNLAFNWEGLIVALP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17030			F-box family protein with a do...		Potri.004G179685 [exp]	0	1
AT3G58630	Trihelix		sequence-specific DNA binding ...		Potri.001G113600 [exp]	2.64	0.7971
AT2G33700			Protein phosphatase 2C family ...		Potri.005G253700 [exp]	5.29	0.6942
AT3G14830			unknown protein		Potri.003G026500 [exp]	12.24	0.7212
AT1G61040		VIP5	vernalization independence 5, ...		Potri.004G039500 [exp]	13.92	0.7841
AT3G09030			BTB/POZ domain-containing prot...		Potri.016G112900 [exp]	15.23	0.7256
AT5G64550			loricrin-related (.1)		Potri.001G206600 [exp]	15.58	0.7254
AT3G08780			unknown protein		Potri.016G126200 [exp]	16.52	0.6694
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Potri.008G055300 [exp]	16.73	0.7335
AT5G58020			unknown protein		Potri.018G109800 [exp]	17.43	0.7368
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Potri.018G075500 [exp]	18.16	0.7292

Compare expression of checked genes

Potri.004G179685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.