Plant FIBer expression Database

Potri.004G179877 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G179866
[exp]
318 / 1e-112 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G179877.1 pacid=42796518 polypeptide=Potri.004G179877.1.p locus=Potri.004G179877 ID=Potri.004G179877.1.v4.1 annot-version=v4.1
ATGAGAGGGGGTGGGCTGCTGTTTTGGAGTAGAGGCCGGTGTGCAAGGAAGAAAAATCCCAGCGGGCAGTGGCTGAGAGTTTTGCGCTCGGCAGCTCCCA
GCAGAAGACAATCAAAATGGAGGGGCTGGTTTGGTTCCTTTTTGTGGCCAGGAGAGGGGGCTGCCCTGGTTTGGTTTTGCAAGAGAAGGGCTGCTGCTTG
TGCCCGCTGCTGCTGGTTGAGGGAGAAGAGAAAAAAAGTCCTCTGGAGGGGTCGGCTGGGGAAGAAACCAGAAGAGAATCAGCTCCCGTTTTTCCCCCCT
TGTCCCATACGTCAGGTCTGCCTATATGAAGGAAAAGGGAGCAGCGGGGAAGGAAGAGGGACCGGGGACCATCAGTCCTCTTGCCAGCTGCTGTGGGGTT
CCTGTCTAGGCTCCTCCCCTGATTTTCAGCCGAAAAAGAGGGATCAAAAAATGGTGTTGGACCCGGGGAGCGGCTCTTCGGCGCTGTGGGCGCAGGGGAG
CAGAAAAGATATTAAGTCCCCCCCCTCTTTAATTGTAAAATTGCCCCCTCTTGGAAATTCAGTGTAA
AA sequence
>Potri.004G179877.1 pacid=42796518 polypeptide=Potri.004G179877.1.p locus=Potri.004G179877 ID=Potri.004G179877.1.v4.1 annot-version=v4.1
MRGGGLLFWSRGRCARKKNPSGQWLRVLRSAAPSRRQSKWRGWFGSFLWPGEGAALVWFCKRRAAACARCCWLREKRKKVLWRGRLGKKPEENQLPFFPP
CPIRQVCLYEGKGSSGEGRGTGDHQSSCQLLWGSCLGSSPDFQPKKRDQKMVLDPGSGSSALWAQGSRKDIKSPPSLIVKLPPLGNSV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G179877
[exp]
0 1
Potri.004G179866
[exp]
1.00 0.9955
AT4G31500 SUR2, RNT1, RED... SUPERROOT 2, RUNT 1, RED ELONG... Potri.002G025300
[exp]
4.47 0.8984
Potri.011G073291
[exp]
7.07 0.9178
AT3G62200 Putative endonuclease or glyco... Potri.013G003301
[exp]
10.53 0.8840
AT3G47780 ABCA7, ATATH6 A. THALIANA ABC2 HOMOLOG 6, AT... Potri.015G063400
[exp]
10.95 0.9239 Pt-ATH2.2
AT3G12650 unknown protein Potri.001G269000
[exp]
11.53 0.8990
Potri.015G120500
[exp]
12.64 0.9092
AT3G53310 B3 REM20 AP2/B3-like transcriptional fa... Potri.011G006050
[exp]
12.96 0.8980
AT5G06720 ATPA2 peroxidase 2 (.1) Potri.003G215001
[exp]
12.96 0.9112
AT3G10300 Calcium-binding EF-hand family... Potri.006G047300
[exp]
14.28 0.9198

Potri.004G179877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.