Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28780 200 / 5e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G18430 197 / 9e-60 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G55050 197 / 1e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G33370 196 / 2e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71250 196 / 3e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 194 / 1e-58 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT5G37690 193 / 2e-58 SGNH hydrolase-type esterase superfamily protein (.1) AT1G29660 189 / 1e-56 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 184 / 6e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 183 / 2e-54 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G104900 [exp] 311 / 1e-103 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G089700 [exp] 241 / 5e-77 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024700 [exp] 218 / 5e-68 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024400 [exp] 209 / 1e-64 AT3G04290 538 / 0.0 Li-tolerant lipase 1 (.1) Potri.019G024800 [exp] 208 / 8e-64 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.002G253400 [exp] 207 / 1e-63 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024600 [exp] 205 / 8e-63 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051000 [exp] 204 / 1e-62 AT3G04290 543 / 0.0 Li-tolerant lipase 1 (.1) Potri.017G130100 [exp] 203 / 2e-62 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025104 [exp] 409 / 1e-142 AT5G55050 211 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023980 [exp] 403 / 4e-140 AT5G55050 215 / 1e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023979 [exp] 393 / 3e-136 AT5G55050 229 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025105 [exp] 387 / 7e-134 AT5G55050 233 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037112 [exp] 286 / 3e-94 AT5G55050 176 / 1e-51 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10036966 [exp] 282 / 1e-92 AT3G04290 198 / 3e-60 Li-tolerant lipase 1 (.1) Lus10037113 [exp] 281 / 3e-92 AT3G04290 192 / 6e-58 Li-tolerant lipase 1 (.1) Lus10021540 [exp] 222 / 2e-69 AT5G55050 357 / 5e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039877 [exp] 202 / 2e-61 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10026647 [exp] 198 / 3e-60 AT5G55050 159 / 4e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.004G180400.1 pacid=42795042 polypeptide=Potri.004G180400.1.p locus=Potri.004G180400 ID=Potri.004G180400.1.v4.1 annot-version=v4.1 ATGGAAAGCAGAACTTTTCTTCAAGTCCTATGCTTGGCCATTGTTGGTCTTGGCTTTGCAAATGCAGAGGTTCCGGCTGTTTTTGTATTGGGAGATTCGA CAGCTGATGTTGGGACTAACAATTTCTTACCAGGATTCAAAGCGAGGGCTGACTTTCCTCCCAATGGCATTGATTTTCCCTCCTCTAGACCAACTGGAAG GTTCAGTAATGGTTTTAACAGTGCTGATTTTCTAGCTATGCTAATGGGATTCAAGAGAAGCCCACTACCTTTCTTTGCTCTCGCTGGCAATCCAAAATTG CTCAAACGGCCTAGCTTTCGGGGAGTAAATTTTGCCTCTGCAGGGTCTGGCATTCTTGACATGACTGGGCAAACTGCGTTAACCAGCTCGCTGAGCGGTG TTAAGAATGTTGTCCCACTACGAGAGCAGATTGAGCAACTTTCTGCAGTCCATGACAATCTTACAGCTATTAAGGGTTCAGCATATACAGAAATTCTTTT CTCAAGGTCACTGTTCTTCATTAGCATTGGTAGCAACGATCTTCTTAGTTATTTCTATTCAAACAGTAGTGTACCCAAGCAAGAGTTCATTTCTGCTTTG GGACTTGAATACGAAAAACAAATAATGAGTATCCTTGAGCTTGGAGCAAAGAAGATTGGTATTATTAGTGTTCCACCAGTTGGTTGCTGCCCATCTCAAA GGGCTTTCAATGAAAGTGGGGGCTGTTTGGAGGGTTTGAATGACCTTGCTTTAGAATTTCATTCAACAATCAACGCCCTCCTGATGAAGCTCGGCTCAGA ATATACAGACCTAAAGTATTCACTTGGAAACGCATATGAGATGACCATCAATGTGATAGACAACCCTTTTCCATTCGGATTTAAGGAGGTGCAAACTGCT TGTTGTGGAGTTAAGAGGTTCAATGGCGAAGGCATCTGTGACAAAAATGCAAATCTTTGTCTGAATCGCCATGAATACTTGTTCTGGGATTTATTCCATC CTACAATGACTGCTTCAAAACTAGCAGCTCTAACCCTTTATGCTGGTGAACCACGATTTGTATCCCCAATTAATTTCAAACAGTTGGCTGAGGCTTGA
AA sequence Show only first row Show all	>Potri.004G180400.1 pacid=42795042 polypeptide=Potri.004G180400.1.p locus=Potri.004G180400 ID=Potri.004G180400.1.v4.1 annot-version=v4.1 MESRTFLQVLCLAIVGLGFANAEVPAVFVLGDSTADVGTNNFLPGFKARADFPPNGIDFPSSRPTGRFSNGFNSADFLAMLMGFKRSPLPFFALAGNPKL LKRPSFRGVNFASAGSGILDMTGQTALTSSLSGVKNVVPLREQIEQLSAVHDNLTAIKGSAYTEILFSRSLFFISIGSNDLLSYFYSNSSVPKQEFISAL GLEYEKQIMSILELGAKKIGIISVPPVGCCPSQRAFNESGGCLEGLNDLALEFHSTINALLMKLGSEYTDLKYSLGNAYEMTINVIDNPFPFGFKEVQTA CCGVKRFNGEGICDKNANLCLNRHEYLFWDLFHPTMTASKLAALTLYAGEPRFVSPINFKQLAEA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Potri.004G180400 [exp]	0	1
AT3G02100			UDP-Glycosyltransferase superf...		Potri.017G091500 [exp]	1.00	0.9992
AT5G48450		SKS3	SKU5 similar 3 (.1)		Potri.008G032100 [exp]	2.44	0.9992
					Potri.007G117900 [exp]	2.64	0.9969
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.010G000400 [exp]	3.00	0.9992	MALD1.1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G213223 [exp]	3.87	0.9977
AT5G39160			RmlC-like cupins superfamily p...		Potri.011G163216 [exp]	4.24	0.9963
AT4G18950			Integrin-linked protein kinase...		Potri.017G123100 [exp]	5.47	0.9971
AT3G17675			Cupredoxin superfamily protein...		Potri.013G061300 [exp]	6.32	0.9977
AT4G31130			Protein of unknown function (D...		Potri.007G002900 [exp]	8.83	0.9886
					Potri.014G082000 [exp]	9.38	0.9967

Compare expression of checked genes

Potri.004G180400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.