Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41990 256 / 1e-84 unknown protein AT4G35170 239 / 6e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G45688 182 / 4e-55 unknown protein AT5G42860 176 / 6e-53 unknown protein AT3G24600 129 / 6e-34 Late embryogenesis abundant protein, group 2 (.1) AT3G08490 52 / 2e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G140600 [exp] 462 / 1e-165 AT2G41990 232 / 5e-75 unknown protein Potri.007G045000 [exp] 200 / 2e-62 AT1G45688 273 / 4e-90 unknown protein Potri.003G052900 [exp] 184 / 3e-56 AT1G45688 176 / 6e-53 unknown protein Potri.001G183600 [exp] 182 / 2e-55 AT1G45688 185 / 4e-56 unknown protein Potri.014G026800 [exp] 179 / 2e-54 AT1G45688 301 / 2e-101 unknown protein Potri.002G124600 [exp] 177 / 2e-53 AT1G45688 284 / 1e-94 unknown protein Potri.006G160100 [exp] 155 / 5e-45 AT3G24600 184 / 3e-54 Late embryogenesis abundant protein, group 2 (.1) Potri.009G061300 [exp] 66 / 6e-12 AT3G08490 209 / 7e-66 unknown protein Potri.001G267200 [exp] 63 / 4e-11 AT3G08490 196 / 6e-61 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022644 [exp] 366 / 3e-127 AT4G35170 279 / 4e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003341 [exp] 292 / 1e-97 AT2G41990 221 / 4e-70 unknown protein Lus10025793 [exp] 194 / 7e-60 AT1G45688 221 / 5e-70 unknown protein Lus10035869 [exp] 192 / 3e-59 AT1G45688 219 / 3e-69 unknown protein Lus10029743 [exp] 180 / 2e-54 AT1G45688 301 / 4e-101 unknown protein Lus10009749 [exp] 169 / 2e-50 AT5G42860 256 / 2e-84 unknown protein Lus10010232 [exp] 166 / 5e-49 AT1G45688 416 / 3e-146 unknown protein Lus10034926 [exp] 148 / 2e-42 AT1G45688 182 / 5e-55 unknown protein Lus10023652 [exp] 147 / 1e-41 AT1G45688 183 / 2e-55 unknown protein Lus10010231 [exp] 70 / 7e-15 AT5G42860 84 / 1e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G180900.1 pacid=42795504 polypeptide=Potri.004G180900.1.p locus=Potri.004G180900 ID=Potri.004G180900.1.v4.1 annot-version=v4.1 ATGCACGCCAAGACGGACTCGGATGGAACCAGTCTTGACAACTCATGGCTACCAAGGTCACCAAGAAGGCCGTTATACTACGTTCAAAGTCCATCAAACC ATGACGCGGAGAAAATGTCTTATGGGTCAAGCCCGACCGTGTCACCAGCACACCTTTACTACCACAGTTCACCAATTCACCATTCTCGCGAGTCTTCTGC GTCAATATTCTCCAATTCACTCAAGATCCCAAGAAGTTTATCTGCTTGGAAACATATAAGGATTGGCAACCAAGATGGTGCTGTTCATGATGGTGCTGAG GGTGATAAGGATGGTGATGATTGGGGGAGCGGTGCACGTAATGTGAGACTGTATTTCATTGGGTTCTTGTTCTTTGTTCTGCTGTTCACTGTCTTTTGTT TGATCTTGTGGGGTGCAAGCAAGGCTTACGAGCCTGAAATTTCAGTCAAGAGCATGGTGTTCGAGAATTTTTATGTTCAGGCAGGGAATGATCAATCGGG AGTGCCAACAGATATGCTGTCCTTGAATTCTACGGTCAAGATTCATTACAAAAACCCCGCTACCTTTTTTGCCGTCCATGTCACCTCTACCCCTCTCGAG ATTCACTATTTCCAGCTGAAACTTGCCTCTGGACAGATGAAGAAGTTTTCTCAATCGAGGAAGAGCAAGAGGACGGTGGCAACGGTGGTGCATGGTTCCC AAGTTCCCCTATATGGAGGGCTGCCGCTTCTCTCTAATGCTAGAGCGCATGGTAACAAAGTTGCACTGCCTCTGAACCTGACATTTGTCTTGAGGTCCAG GGCCTTCATTTTGGGAAGATTGGTGAAGTCAAAGTTTCATAAGCGTGTTAGATGCACTGTTGCTCTTACTGGCCAGAAACTCGGCAAGCCCCACAGGTTG ACAAATGCATGTGTTTATCACTGA
AA sequence Show only first row Show all	>Potri.004G180900.1 pacid=42795504 polypeptide=Potri.004G180900.1.p locus=Potri.004G180900 ID=Potri.004G180900.1.v4.1 annot-version=v4.1 MHAKTDSDGTSLDNSWLPRSPRRPLYYVQSPSNHDAEKMSYGSSPTVSPAHLYYHSSPIHHSRESSASIFSNSLKIPRSLSAWKHIRIGNQDGAVHDGAE GDKDGDDWGSGARNVRLYFIGFLFFVLLFTVFCLILWGASKAYEPEISVKSMVFENFYVQAGNDQSGVPTDMLSLNSTVKIHYKNPATFFAVHVTSTPLE IHYFQLKLASGQMKKFSQSRKSKRTVATVVHGSQVPLYGGLPLLSNARAHGNKVALPLNLTFVLRSRAFILGRLVKSKFHKRVRCTVALTGQKLGKPHRL TNACVYH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41990			unknown protein		Potri.004G180900 [exp]	0	1
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Potri.015G041300 [exp]	6.08	0.9049
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.009G096900 [exp]	13.03	0.8780
AT3G60670			PLATZ transcription factor fam...		Potri.014G059300 [exp]	16.52	0.8940
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.001G252300 [exp]	19.07	0.9029
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Potri.006G097300 [exp]	22.51	0.8642
AT5G45540			Protein of unknown function (D...		Potri.015G059200 [exp]	22.97	0.9041
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G119900 [exp]	23.10	0.8959
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050300 [exp]	24.00	0.8831
					Potri.001G021300 [exp]	24.33	0.8923
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Potri.006G114200 [exp]	24.55	0.8881

Compare expression of checked genes

Potri.004G180900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.