Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrEXLA1,EXLA1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38400 349 / 3e-122 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G45970 340 / 1e-118 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT3G45960 322 / 1e-111 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT4G17030 172 / 9e-53 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT1G65680 114 / 2e-30 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT2G20750 110 / 8e-29 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT4G28250 107 / 1e-27 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT1G65681 99 / 5e-25 EXPB6 beta expansin 6 (.1) AT2G45110 95 / 4e-23 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT1G12560 93 / 3e-22 ATHEXPALPHA1.26, ATEXP7, ATEXPA7 expansin A7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G141400 [exp] 480 / 4e-174 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.001G151500 [exp] 198 / 5e-63 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.003G083200 [exp] 196 / 4e-62 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G147200 [exp] 189 / 2e-59 AT4G17030 180 / 4e-56 expansin-like B1 (.1) Potri.003G087000 [exp] 183 / 4e-57 AT4G17030 183 / 3e-57 expansin-like B1 (.1) Potri.013G134300 [exp] 115 / 7e-31 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.019G101900 [exp] 112 / 1e-29 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.014G066300 [exp] 107 / 1e-27 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.001G001100 [exp] 86 / 1e-19 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022639 [exp] 387 / 3e-137 AT3G45970 321 / 3e-111 EXPANSIN L1, expansin-like A1 (.1) Lus10003336 [exp] 377 / 2e-133 AT3G45970 320 / 6e-111 EXPANSIN L1, expansin-like A1 (.1) Lus10023968 [exp] 365 / 2e-128 AT3G45970 301 / 4e-103 EXPANSIN L1, expansin-like A1 (.1) Lus10025116 [exp] 222 / 1e-73 AT4G38400 187 / 2e-60 EXPANSIN L2, expansin-like A2 (.1) Lus10001009 [exp] 197 / 1e-62 AT4G17030 308 / 2e-106 expansin-like B1 (.1) Lus10011013 [exp] 195 / 5e-62 AT4G17030 302 / 2e-104 expansin-like B1 (.1) Lus10000958 [exp] 186 / 2e-58 AT4G17030 303 / 1e-104 expansin-like B1 (.1) Lus10030931 [exp] 185 / 9e-58 AT4G17030 183 / 2e-57 expansin-like B1 (.1) Lus10011012 [exp] 174 / 2e-53 AT4G17030 219 / 2e-71 expansin-like B1 (.1) Lus10000957 [exp] 171 / 1e-52 AT4G17030 226 / 2e-74 expansin-like B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.004G181700.1 pacid=42793817 polypeptide=Potri.004G181700.1.p locus=Potri.004G181700 ID=Potri.004G181700.1.v4.1 annot-version=v4.1 ATGGCTATCTTTATTTGCTTTCTTTTCCTGGCTATCTCCTATGCTACTGCTTGTGATCGCTGTGTCCACCAATCTAAGGTCGCATATTTCTCCAGAGACT CAGCACTCTCATCTGGGGCTTGTGGATATGGTTCCATGGCGACAGGATTTAACAGTGGGCACCTCGCAGCTGCTGTTTCTTCCCTTTATAAAGATGGATC TGGATGTGGTGCTTGTTTTCAGATAAGATGCAAAGACACAACTTTATGCAGTAGAGAAGGGACTAGAGTGATTGTGACTGATCTCAATCGCAATAACCAG ACTGACTTTGTTCTTAGCAGCAGAGCCTTCATGGCCATGGCCAATAAGGATAAGGGTCGGAACATCTTGAAACAAGGGATTGTGGAAGTGGAATACAAAA GGGTACCTTGTGAATACAAAAACCAGAATTTGGCTGTCCGAGTAGAAGAATCAAGCAAAAACTCAAATTACTTGGCCATTAAATTGTTGTATCAAGGTGG TCAGACAGAAGTGGTAGCCATTGACTTTGCCAAGGTTGGTTCTTCGAACTGGGGTTTCATGAGCCGGAACCATGGGGCAGTGTGGGACTCGGACAGAGTT CCATCAGGGGCACTTCAATTCAGATTCGTGATAACAGCTGGATTTGATGGGAAATGGATTTGGGCTCGGAATGTCCTGCCTGAAGATTGGAAGCCCGGGA TGACATACGATTCAGGAGTCCAGATCACCGATATTGCACAAGAGGGTTGCTCTCCATGTGATGATGGGATTTGGAAATGA
AA sequence Show only first row Show all	>Potri.004G181700.1 pacid=42793817 polypeptide=Potri.004G181700.1.p locus=Potri.004G181700 ID=Potri.004G181700.1.v4.1 annot-version=v4.1 MAIFICFLFLAISYATACDRCVHQSKVAYFSRDSALSSGACGYGSMATGFNSGHLAAAVSSLYKDGSGCGACFQIRCKDTTLCSREGTRVIVTDLNRNNQ TDFVLSSRAFMAMANKDKGRNILKQGIVEVEYKRVPCEYKNQNLAVRVEESSKNSNYLAIKLLYQGGQTEVVAIDFAKVGSSNWGFMSRNHGAVWDSDRV PSGALQFRFVITAGFDGKWIWARNVLPEDWKPGMTYDSGVQITDIAQEGCSPCDDGIWK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Potri.004G181700 [exp]	0	1	PtrEXLA1,EXLA1.2
AT4G38350			Patched family protein (.1.2)		Potri.005G251800 [exp]	1.73	0.7304
AT5G07290		AML4	MEI2-like 4 (.1)		Potri.012G107100 [exp]	5.65	0.6360
AT1G73165		CLE1	CLAVATA3/ESR-RELATED 1 (.1)		Potri.001G376100 [exp]	6.32	0.6699
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Potri.008G101500 [exp]	9.48	0.7102
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Potri.009G141400 [exp]	10.29	0.7409
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Potri.005G026200 [exp]	16.88	0.6287
AT5G46910			Transcription factor jumonji (...		Potri.003G096100 [exp]	17.88	0.6772
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Potri.006G186600 [exp]	26.03	0.7023
AT1G80610			unknown protein		Potri.001G313900 [exp]	26.07	0.6013
AT3G55430			O-Glycosyl hydrolases family 1...		Potri.008G055900 [exp]	26.83	0.7233

Compare expression of checked genes

Potri.004G181700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.