Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35190 361 / 3e-128 LOG5 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) AT2G37210 323 / 3e-113 LOG3 LONELY GUY 3, lysine decarboxylase family protein (.1.2) AT2G28305 320 / 3e-112 ATLOG1 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) AT3G53450 315 / 3e-110 LOG4 LONELY GUY 4, Putative lysine decarboxylase family protein (.1) AT5G06300 313 / 1e-109 LOG7 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) AT2G35990 291 / 1e-100 LOG2 LONELY GUY 2, Putative lysine decarboxylase family protein (.1.2.3) AT5G11950 280 / 4e-96 LOG8 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) AT5G03270 258 / 2e-87 LOG6 LONELY GUY 6, lysine decarboxylase family protein (.1) AT5G26140 160 / 4e-50 ATLOG9 LONELY GUY 9, Putative lysine decarboxylase family protein (.1) AT1G50575 42 / 0.0002 Putative lysine decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G141500 [exp] 416 / 9e-150 AT4G35190 357 / 2e-126 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.005G248900 [exp] 381 / 5e-136 AT4G35190 297 / 7e-103 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.002G012500 [exp] 380 / 1e-135 AT4G35190 300 / 5e-104 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.016G090500 [exp] 327 / 6e-115 AT2G37210 392 / 8e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.006G127400 [exp] 325 / 4e-114 AT2G37210 396 / 3e-142 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.009G010800 [exp] 324 / 8e-114 AT2G28305 359 / 8e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.004G212200 [exp] 322 / 4e-113 AT2G28305 361 / 1e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.006G204800 [exp] 309 / 1e-107 AT5G06300 316 / 9e-111 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.002G024000 [exp] 299 / 8e-104 AT2G37210 310 / 2e-108 LONELY GUY 3, lysine decarboxylase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025117 [exp] 394 / 1e-140 AT4G35190 373 / 1e-132 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10022638 [exp] 380 / 2e-135 AT4G35190 365 / 2e-129 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10003335 [exp] 379 / 3e-135 AT4G35190 359 / 2e-127 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10023967 [exp] 370 / 2e-131 AT4G35190 358 / 1e-126 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10026513 [exp] 330 / 8e-116 AT2G37210 394 / 1e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10016096 [exp] 329 / 1e-115 AT2G28305 384 / 7e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10021462 [exp] 323 / 2e-113 AT2G28305 386 / 1e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10002226 [exp] 320 / 6e-112 AT2G37210 379 / 2e-135 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10012436 [exp] 312 / 1e-108 AT5G06300 332 / 7e-117 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Lus10023190 [exp] 309 / 1e-107 AT2G37210 364 / 6e-130 LONELY GUY 3, lysine decarboxylase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0349 [poplar] [flax] SLOG PF03641 [poplar] [flax] Lysine_decarbox Possible lysine decarboxylase
Representative CDS sequence Show only first row Show all	>Potri.004G181800.1 pacid=42796716 polypeptide=Potri.004G181800.1.p locus=Potri.004G181800 ID=Potri.004G181800.1.v4.1 annot-version=v4.1 ATGGAGGGGAAAGCAGTGAAACCTTCAAGATTCAAAAGTGTTTGTGTGTTTTGTGGTAGCAGTACTGGGAAAAGAAACTGCTACAGGGATGCTGCCATTG AACTAGCCCAAGAGCTGGTGGCGAAAAGGTTGGATCTTGTGTATGGAGGTGGAAGCATTGGACTAATGGGTTTGGTTTCTCAAGCAGTTCATAGAGGTGG AGGCAATGTTCTTGGGATCATACCAAGGACTTTGATGAGTAAAGAGATCACAGGAGAAACAGTTGGAGAGGTTAAACCAGTAGCCGACATGCACCAAAGA AAGGCAGAAATGGCCCGCAATTCTGATTGTTTTATAGCCCTACCAGGTGGCTATGGCACTCTGGAGGAATTATTAGAAGTGATTACTTGGGCTCAGTTAG GCATCCATGACAAACCTGTGGGTTTGCTCAACGTTGATGGTTACTACAATTACCTTCTGACTTTCATCGACAAAGCCGTGGATGATGGCTTTATCAAGCC TTCCCAACGAAACATCATTGTCTCTGCACCAAGTGCCAAAGAACTCGTTCAAAAACTTGAGGAGTACGTGCCTGTGCATGATGGAGTTATAGCCAAGGCA AGCTGGGAGATTGAGCAGCAGCAATCACCACAGCAACACCAACAACAGGTGGGGTTCAATACTACAACTTTGCAGACTGAAGTCGCTCTATAA
AA sequence Show only first row Show all	>Potri.004G181800.1 pacid=42796716 polypeptide=Potri.004G181800.1.p locus=Potri.004G181800 ID=Potri.004G181800.1.v4.1 annot-version=v4.1 MEGKAVKPSRFKSVCVFCGSSTGKRNCYRDAAIELAQELVAKRLDLVYGGGSIGLMGLVSQAVHRGGGNVLGIIPRTLMSKEITGETVGEVKPVADMHQR KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPSAKELVQKLEEYVPVHDGVIAKA SWEIEQQQSPQQHQQQVGFNTTTLQTEVAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Potri.004G181800 [exp]	0	1
					Potri.017G041400 [exp]	1.73	0.8919
AT1G30760			FAD-binding Berberine family p...		Potri.011G161500 [exp]	4.24	0.8993
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.005G182700 [exp]	4.47	0.8825	ACO4
AT1G73965		CLE13	CLAVATA3/ESR-RELATED 13 (.1)		Potri.008G115600 [exp]	5.09	0.8954	CLE12.2
AT1G18010			Major facilitator superfamily ...		Potri.012G011000 [exp]	5.29	0.8791
AT3G24220		ATNCED6, NCED6	nine-cis-epoxycarotenoid dioxy...		Potri.003G176300 [exp]	5.65	0.8754
AT5G47900			Protein of unknown function (D...		Potri.001G071500 [exp]	7.21	0.8266
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G013300 [exp]	13.26	0.8882
AT4G17920			RING/U-box superfamily protein...		Potri.003G093500 [exp]	15.49	0.8718
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Potri.003G124300 [exp]	16.30	0.8406

Compare expression of checked genes

Potri.004G181800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.