Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17040 140 / 2e-41 NAC ANAC036 NAC domain containing protein 36 (.1) AT1G62700 72 / 3e-15 NAC ANAC026, VND5 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1) AT1G12260 71 / 9e-15 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT1G65910 71 / 1e-14 NAC ANAC028 NAC domain containing protein 28 (.1) AT1G56010 69 / 2e-14 NAC NAC1, ANAC021, ANAC022 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) AT4G10350 68 / 8e-14 NAC BRN2, NST4, ANAC070 BEARSKIN 2, NAC domain containing protein 70 (.1) AT2G02450 67 / 2e-13 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT1G33280 66 / 3e-13 NAC BRN1, ANAC015, NST5 BEARSKIN 1, NAC domain containing protein 15 (.1) AT2G18060 65 / 1e-12 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT4G36160 65 / 1e-12 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G141600 [exp] 285 / 3e-98 AT2G17040 314 / 6e-108 NAC domain containing protein 36 (.1) Potri.005G103200 [exp] 117 / 7e-33 AT2G17040 249 / 6e-83 NAC domain containing protein 36 (.1) Potri.007G014400 [exp] 74 / 1e-15 AT2G18060 427 / 1e-149 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Potri.010G176600 [exp] 73 / 1e-15 AT1G79580 344 / 8e-118 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.010G166200 [exp] 72 / 2e-15 AT1G69490 305 / 1e-104 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.008G080000 [exp] 72 / 3e-15 AT1G79580 333 / 2e-113 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.005G116800 [exp] 69 / 5e-14 AT2G18060 441 / 2e-155 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Potri.015G046800 [exp] 68 / 6e-14 AT3G18400 326 / 1e-111 NAC domain containing protein 58 (.1) Potri.011G153300 [exp] 69 / 7e-14 AT2G46770 297 / 4e-98 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022636 [exp] 149 / 2e-44 AT2G17040 287 / 6e-97 NAC domain containing protein 36 (.1) Lus10025118 [exp] 136 / 1e-39 AT2G17040 258 / 1e-85 NAC domain containing protein 36 (.1) Lus10003333 [exp] 136 / 1e-39 AT2G17040 293 / 2e-99 NAC domain containing protein 36 (.1) Lus10023966 [exp] 134 / 2e-38 AT2G17040 268 / 3e-89 NAC domain containing protein 36 (.1) Lus10009939 [exp] 67 / 8e-14 AT1G79580 314 / 4e-107 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10017353 [exp] 67 / 3e-13 AT4G35580 245 / 7e-75 NAC transcription factor-like 9 (.1.2.3) Lus10009029 [exp] 66 / 7e-13 AT3G18400 311 / 3e-105 NAC domain containing protein 58 (.1) Lus10031142 [exp] 65 / 1e-12 AT1G12260 351 / 4e-120 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10031721 [exp] 65 / 1e-12 AT1G12260 353 / 4e-121 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10039153 [exp] 65 / 1e-12 AT4G10350 327 / 4e-110 BEARSKIN 2, NAC domain containing protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.004G181900.5 pacid=42794687 polypeptide=Potri.004G181900.5.p locus=Potri.004G181900 ID=Potri.004G181900.5.v4.1 annot-version=v4.1 ATGATCGGATTCAGAAAGACTCTTGTTTTCTATAAGGGAAGAGCACCGAGAGGGTCCAAGACCGATTGGGTCATGAACGAGTATCGCCTGCCTGAATATT CAAGCCCCCTGCCCAAGGACATAGTATTGTGCAAGATATATAGGAAGGCAACTTCGTTGAAAGTTCTAGAGCAAAGGGCAGCAATGGAAGAAGAAATGAA GACAATTCATGCATCTCCATCATCATCATCTTTGGACACCATGTCATTTTGCAGTCAGCCAGAAGATCCAGTCCCACCAGAATTGCCTACGCAACACTTG GTTTTCAAGAAAGAGATAGAAGATGACATTATTAGATATGAAAAGCCAAGGGAGATTAAAGGGCCAAGTCTTCAATTACCAATGGGGACGGACAAGTTAC CAGAGCTCCAGGTTCCCAGCAAATTGAGCATGGAGTGGAACCAAGATCCAATTTGGTCCCTAAATAGTCCCTGGCTTCAAAATTTGATCCCTTATGCAGA CATTTTGAATTTCTAA
AA sequence Show only first row Show all	>Potri.004G181900.5 pacid=42794687 polypeptide=Potri.004G181900.5.p locus=Potri.004G181900 ID=Potri.004G181900.5.v4.1 annot-version=v4.1 MIGFRKTLVFYKGRAPRGSKTDWVMNEYRLPEYSSPLPKDIVLCKIYRKATSLKVLEQRAAMEEEMKTIHASPSSSSLDTMSFCSQPEDPVPPELPTQHL VFKKEIEDDIIRYEKPREIKGPSLQLPMGTDKLPELQVPSKLSMEWNQDPIWSLNSPWLQNLIPYADILNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.004G181900 [exp]	0	1
AT1G25390			Protein kinase superfamily pro...		Potri.010G121025 [exp]	1.73	0.9854
AT1G25390			Protein kinase superfamily pro...		Potri.010G121100 [exp]	3.00	0.9728
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.017G004800 [exp]	3.46	0.9690
AT1G02260			Divalent ion symporter (.1)		Potri.017G141950 [exp]	4.47	0.9708
AT4G23880			unknown protein		Potri.003G140200 [exp]	5.29	0.9688
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.015G040400 [exp]	5.83	0.9526
AT4G23880			unknown protein		Potri.003G140233 [exp]	6.32	0.9682
AT4G23880			unknown protein		Potri.003G140266 [exp]	6.70	0.9680
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Potri.005G256100 [exp]	7.74	0.9678	11
AT4G23220		CRK14	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029100 [exp]	8.12	0.9478

Compare expression of checked genes

Potri.004G181900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.