Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 197 / 5e-62 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 189 / 4e-59 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 170 / 1e-51 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 169 / 2e-51 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 125 / 3e-34 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 100 / 1e-24 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 98 / 1e-23 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 87 / 2e-19 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35660 71 / 5e-14 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51400 71 / 7e-14 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142700 [exp] 419 / 1e-148 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 275 / 5e-92 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 261 / 8e-87 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 256 / 6e-85 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 254 / 4e-84 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 234 / 4e-76 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 233 / 8e-76 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103700 [exp] 190 / 2e-58 AT4G35690 179 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 187 / 3e-58 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025126 [exp] 230 / 6e-75 AT2G17080 218 / 1e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 227 / 9e-74 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 224 / 7e-73 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 222 / 6e-72 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 221 / 3e-71 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 216 / 1e-69 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 214 / 8e-69 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 213 / 4e-68 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 207 / 3e-66 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025122 [exp] 205 / 3e-65 AT4G35210 214 / 3e-69 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF03087 [poplar] [flax] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.004G182550.1 pacid=42794558 polypeptide=Potri.004G182550.1.p locus=Potri.004G182550 ID=Potri.004G182550.1.v4.1 annot-version=v4.1 ATGGTTGTCTCTCCAATCTGTCCCAAAACCAGCTTCCATGCTCGATCCAACAGTCTACCCTCTAGACCACACCCAATTATTTCAGAATTTGATGAGCATA TTAGCCGAGTAAGAGATTCACAGGCTACCTCTACATCATTTTCATCATCGATAGGCCACAAACTAAGTAGCCTTCAGGATGTGTATGATTCTGTTGATAA ATTCCTACAGCTGCCACTTACACAACAAGGATTAGCAGGAGAACACAATCAGAAATGTACTGATGAGATCCTAGATGGATCTCTCAGGCTCTTGGACGTG TGCAACTCTGCCAAAGATGCACTGTTGCAATCAAAAGAATACATCCGCGAGCTTCAATCGGTTATTCGCAGAAGACAAGGAGGTCATGATAGCGAGATCA GGAAATATATAGCATCCAGGAAAGTAGTAAAGAAGAAAATAAAAAAGGCCTTGAAGAACTTGAAGGGCATTGAAAACAAGTGCACCTTCTCTAGTGAAGA CCCTGAGATTGTTACCAGGATTGGCATGTTAAGAGAGGTTGAGTCCATCAGTCTCGCCGTGTTCGAATCATTGCTGTCATTCATTTCTGAACCAAAGTCA CAAGCAAAGAAAAGCGGGTGGTCATTGGTTTCCAAGTTGATACACCACCAAAGAATAGCATGCGAGGAAGAAGAAAAAAATGTGAATGAATTTGCAATGG CTGATGCTGCATTGGAATCTCTTATCAGTTGCACAACAGATAAGATGATGAATGTGCAAAAGAAGCTAAGCAGCTTGGAGTTGTGCATTGAAGATCTTGA AAATGGAATTGAAGGCCTCTACAGGCGCATGATCAAAACTAGAGCCTCCTTTCTCAACATTTTCATTTAG
AA sequence Show only first row Show all	>Potri.004G182550.1 pacid=42794558 polypeptide=Potri.004G182550.1.p locus=Potri.004G182550 ID=Potri.004G182550.1.v4.1 annot-version=v4.1 MVVSPICPKTSFHARSNSLPSRPHPIISEFDEHISRVRDSQATSTSFSSSIGHKLSSLQDVYDSVDKFLQLPLTQQGLAGEHNQKCTDEILDGSLRLLDV CNSAKDALLQSKEYIRELQSVIRRRQGGHDSEIRKYIASRKVVKKKIKKALKNLKGIENKCTFSSEDPEIVTRIGMLREVESISLAVFESLLSFISEPKS QAKKSGWSLVSKLIHHQRIACEEEEKNVNEFAMADAALESLISCTTDKMMNVQKKLSSLELCIEDLENGIEGLYRRMIKTRASFLNIFI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17080			Arabidopsis protein of unknown...		Potri.004G182550 [exp]	0	1
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.002G128000 [exp]	9.94	0.8537
AT1G68630			PLAC8 family protein (.1)		Potri.010G127800 [exp]	12.56	0.8479
					Potri.017G106851 [exp]	12.68	0.6882
AT2G17070			Arabidopsis protein of unknown...		Potri.004G182400 [exp]	14.00	0.6647
AT4G20820			FAD-binding Berberine family p...		Potri.001G464800 [exp]	16.61	0.8415
AT1G73165		CLE1	CLAVATA3/ESR-RELATED 1 (.1)		Potri.011G096800 [exp]	26.64	0.8325
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Potri.010G159900 [exp]	26.90	0.8363	HIUHASE.2
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.009G098400 [exp]	34.75	0.8120
					Potri.001G259204 [exp]	37.14	0.8026
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.016G118500 [exp]	38.06	0.8095

Compare expression of checked genes

Potri.004G182550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.