Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35230 900 / 0 BSK1 BR-signaling kinase 1 (.1) AT5G59010 641 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT1G50990 626 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT3G54030 620 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G63500 609 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G41260 602 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G46570 598 / 0 BSK2 BR-signaling kinase 2 (.1) AT4G00710 597 / 0 BSK3 BR-signaling kinase 3 (.1) AT2G17090 536 / 0 SSP SHORT SUSPENSOR, Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G01740 530 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142800 [exp] 1013 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1) Potri.002G011800 [exp] 867 / 0 AT4G35230 836 / 0.0 BR-signaling kinase 1 (.1) Potri.005G249300 [exp] 862 / 0 AT4G35230 836 / 0.0 BR-signaling kinase 1 (.1) Potri.006G093900 [exp] 649 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.016G105800 [exp] 644 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.009G039500 [exp] 640 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.001G246400 [exp] 639 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.014G179300 [exp] 634 / 0 AT5G46570 814 / 0.0 BR-signaling kinase 2 (.1) Potri.014G082400 [exp] 622 / 0 AT4G00710 826 / 0.0 BR-signaling kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021823 [exp] 816 / 0 AT4G35230 802 / 0.0 BR-signaling kinase 1 (.1) Lus10003329 [exp] 760 / 0 AT4G35230 732 / 0.0 BR-signaling kinase 1 (.1) Lus10034573 [exp] 702 / 0 AT4G35230 778 / 0.0 BR-signaling kinase 1 (.1) Lus10040719 [exp] 637 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10027743 [exp] 622 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 620 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10031967 [exp] 618 / 0 AT5G46570 779 / 0.0 BR-signaling kinase 2 (.1) Lus10035136 [exp] 617 / 0 AT5G46570 779 / 0.0 BR-signaling kinase 2 (.1) Lus10016454 [exp] 616 / 0 AT5G59010 774 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10001998 [exp] 601 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.004G182800.1 pacid=42794314 polypeptide=Potri.004G182800.1.p locus=Potri.004G182800 ID=Potri.004G182800.1.v4.1 annot-version=v4.1 ATGGGTTGTTGTTCTTCTTCATTTTTATCTGAAACACATCCAGAAAAAGACCATAAAAAAACCCATCAACAACAACCACCTCGCAATCCATCAGGTTCTG CTGTACTTGACCCTGCAACAGGAGTCCCTTCTTTCTGTGAATTCTCTTTCTCTGACCTCAAAACAGCTACCAATAACTTCAGTTCTGATAACATAGTCTC TGAAAGTGGTGAAAAGGCACCTAATCTTGTCTACAAAGGTCGACTTCAAAACAGGAGGTGGATCGCTGTTAAGAAGTTTACTAAGATGGCTTGGCCTGAT CCTAAACAGTTTGCGGAGGAGGCATGGGGGGTGGGGAAGTTGAGGCATAAAAAGCTGGCTAATTTGATAGGGTATTGCTGTGATGGAGATGAGAGGCTGC TTGTTGCTGAGTACATGCCTAATGATACTCTAGCTAAGCATTTATTCCATTGGGAAAATCAAACCATTGAATGGGCAATGCGTTTAAGAGTAGCCCTCTA CATTGCTGAAGCCTTAGATTACTGTAGTTCTGAGGGTCGTCCATTATACCATGACTTGAATGCCTATAGGGTTCTCTTTGATGAGGATGGTGATCCACGC CTTTCATGTTTTGGCTTGATGAAAAATAGCAGAGATGGGAAAAGTTACAGTACAAATCTTGCTTACACTCCTCCAGAGTATCTAAGAAATGGAAGGGTCA CACCTGAAAGTGTTATTTACAGCTTTGGTACTGTTCTTCTGGATTTGCTAAGTGGAAAGCATATCCCTCCAAGTCGTGCTATTGATATGATAAGGGGCAA AAACATCATTCTCTTGATGGATTCACATTTGGAGGGAAACTTTTCTACAGAAGAAGCAACTTTGGTTGTTGGGCTTGCCTCCCAGTGTTTGCAATATGAA CCTAGGGAGCGGCCCAGTACGAAGGACCTCGTTACAACACTAGCTCCACTGCAAACAAAACCTGATGTTCCATCTTATGTTATGCTCGGAATATCAAAGC ATGAGGAAGCCCCAGCAACTCCTCAGCGCCCCCTCTCCCCAATGGGGGAGGCCTGTTCACGGATGGACCTAACAGCAATTCATCAGATCTTGGTTATGAC GCACTACAAAGATGACGAGGGAACAAATGAGTTATCTTTCCAAGAGTGGACGCAACAGATGAGAGATATGTTGGAATCGAGAAAGCGAGGGGACTTTGCA TTCCGCGACAAAGATTTTAAAACTGCCATTGACTGTTATTCCCAGTTCATAGACGTAGGAACCATGGTTTCCCCAACTGTTTTTGCTCGGCGTAGTCTTT GTTATCTCTTGTGTGATCAACCAGATGCCGCTCTTCGAGATGCAATGCAAGCACAATGTGTTTATCCAGATTGGCCTACAGCCTTCTACATGCAGTCAGT TGCCCTTGCTAAACTTGACATGCACAATGATGCCGCGGATATGTTGAATGAAGCTGCTGCATTAGAAGAAAAGAAGCAAAGAGGTGGAAAAGGATCATGA
AA sequence Show only first row Show all	>Potri.004G182800.1 pacid=42794314 polypeptide=Potri.004G182800.1.p locus=Potri.004G182800 ID=Potri.004G182800.1.v4.1 annot-version=v4.1 MGCCSSSFLSETHPEKDHKKTHQQQPPRNPSGSAVLDPATGVPSFCEFSFSDLKTATNNFSSDNIVSESGEKAPNLVYKGRLQNRRWIAVKKFTKMAWPD PKQFAEEAWGVGKLRHKKLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYCSSEGRPLYHDLNAYRVLFDEDGDPR LSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSRAIDMIRGKNIILLMDSHLEGNFSTEEATLVVGLASQCLQYE PRERPSTKDLVTTLAPLQTKPDVPSYVMLGISKHEEAPATPQRPLSPMGEACSRMDLTAIHQILVMTHYKDDEGTNELSFQEWTQQMRDMLESRKRGDFA FRDKDFKTAIDCYSQFIDVGTMVSPTVFARRSLCYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQSVALAKLDMHNDAADMLNEAAALEEKKQRGGKGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Potri.004G182800 [exp]	0	1
AT3G63510			FMN-linked oxidoreductases sup...		Potri.009G059900 [exp]	3.46	0.8396
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Potri.002G157100 [exp]	4.47	0.8229
AT1G08530			unknown protein		Potri.019G030400 [exp]	7.74	0.8403
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Potri.011G104400 [exp]	18.49	0.7903
AT2G20740			Tetraspanin family protein (.1...		Potri.018G038400 [exp]	18.57	0.8189
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Potri.005G099400 [exp]	29.59	0.8230
AT4G02120			CTP synthase family protein (....		Potri.014G123200 [exp]	30.98	0.7725
AT3G07750			3'-5'-exoribonuclease family p...		Potri.014G166200 [exp]	35.32	0.7625
					Potri.006G028101 [exp]	38.80	0.8167
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.002G184100 [exp]	51.67	0.7814

Compare expression of checked genes

Potri.004G182800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.