Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35240 639 / 0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 585 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 314 / 3e-93 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 311 / 4e-93 Protein of unknown function (DUF630 and DUF632) (.1) AT1G20530 243 / 3e-70 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 177 / 3e-46 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 165 / 1e-42 Protein of unknown function (DUF630 and DUF632) (.1) AT4G30130 163 / 1e-41 Protein of unknown function (DUF630 and DUF632) (.1) AT5G54480 156 / 2e-39 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 155 / 6e-39 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142900 [exp] 909 / 0 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.005G249400 [exp] 395 / 3e-127 AT1G20530 359 / 9e-116 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G011700 [exp] 366 / 8e-116 AT4G35240 348 / 5e-109 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.002G082000 [exp] 368 / 3e-114 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G179100 [exp] 354 / 8e-109 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G070200 [exp] 246 / 9e-70 AT1G21740 315 / 3e-94 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G090300 [exp] 192 / 2e-51 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G077700 [exp] 191 / 4e-51 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G177200 [exp] 186 / 4e-49 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014445 [exp] 718 / 0 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10023949 [exp] 712 / 0 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10042722 [exp] 321 / 1e-98 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10029683 [exp] 317 / 7e-96 AT1G21740 696 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10012276 [exp] 215 / 3e-60 AT4G35240 248 / 7e-74 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10016004 [exp] 212 / 5e-59 AT4G35240 253 / 1e-75 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10024039 [exp] 190 / 1e-50 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 187 / 1e-49 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10015534 [exp] 181 / 5e-48 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025077 [exp] 179 / 1e-46 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [poplar] [flax] DUF632 Protein of unknown function (DUF632) PF04783 [poplar] [flax] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Potri.004G182900.8 pacid=42795337 polypeptide=Potri.004G182900.8.p locus=Potri.004G182900 ID=Potri.004G182900.8.v4.1 annot-version=v4.1 ATGGGCTGTACAAGTTCGAAACTAGAAGATCTACCAGCCGTTGCGCTTTGCCGTGACCGTTGCGCTTTTCTCGACGAAGCTATTCACCAGCGGTATGCTT TAGCAGAAGCTCACGTGGCTTACATCCAGTCGTTAAAAAGAATTGGTAATTCGTTATATGTTTTTATTGAGAAGGAAAATTTTACCGCCGGCGGCGGCGG CCGTCCGATGTCTCCTAAGCTGAATTTACCTCCGAATAAAAAAAGTGAAGATTTAAAGGTTGTTGGATCGAGTTCGCCGAAGAAAGGTCATCATCTTTCT CATTCCAGTTCGGGCTCTCATCTTCATTTTCACTCGGATGGTGATGATGAAGACGATGATGATGTCTTACATCTTCATCGTTCTGATAACTCCTCTCCGT TGCATGGTCACGGCGAGGGGAGTGGTGGTGATGATGGTGGAGGTGGTCATATTCCGTATATGAGCTCGGATTATATGAATATGGATCAAGATTCATATCC AGGCGGCGGCGGAACGTTTTTTCATACGAATTATATGAAGAATAAAGGCGCTACTCCGTCTGTTATTTACGAGCAAAGGCCAGTGAGTTCCGAGACTGTT CATTTTGGTGAATCTTCGTCGCCTGCTTATTATAATAATTATTCAAATAGCGGTTATGCAATGAGTAATTCGAACCCTTATGGTTATTCTGGATATCCAA ATTATGGTGGTGGGGGTGGTGGTTATAACGGGTCTCAGAATCAGTATGGATCTTCTTCATCTCAACCGCCTCCGGAGGTGCCTTCATCGTCTAAGCCGCC ACCTCCTCCTCCTCCTCCTCCTCCTCCAGGAGCTTCAGCTTGGGATTTCTTGAATCTGTTCGAGGGCTATGATAGGAATTATCCACAGTACACGCCGAGT AGGGACTCCAAGGAGTTGAGAGAAGAGGAGGGGATTCCGGATTTGGAAGATGAGGATTACCAACATGAGTTTGTGAAGGAAGTTCACGTGGATAAAAAAT ATATGGATGGGGCTAAAAAATTTTCACAGTCGCCGGTAATGGATGATGGGGATGGTAAAGTTGAAGGTGATACTGAGGCTTCTGCTTCGCTTTATCAAAC TAGGCCGAGTGTGGCTACTGAGGAAGATAGAGTGGCGTATGAGGTTCATGTGGTAGATAAGAAAATTGTTGATAATGAGAGGTCTGAGCAGCGAAGCAAT GCTGGATTTAAGGGCCGAGGAGGTGGACCACTGGAAGTGGCTGTGGAAATTAAGATTCAGTTTGAGAGAGCTTCAGAGTGTGGTAATGAGATTGCGAAGA TGCTTGAAGTCGGAAAGCTCCCATATCAGCGCAAACATGCTGTTTCCAAGATGTTGCGAGTTACTCCTCCATTATCTGTAGTATCTTCACAGCCGTCTAC TTCTGGAAGTGCTGTGGCTGGTCCCCCTTCCTTGGAGATTGATGAAGAATTGATGGTGAGATCGAAAAATCTTTCTTCTACCTTACAAAAGCTATATCTT TGGGAGAAGAAACTCTATCAAGAAGTTAAGGTTGAGGAGAAAATGCGGGTGGCTCATGAGAAAAAGTGTCGTAAGCTGAAGCGTTTAGATGAGAGGGGTG CTGAAGTCGATAAAGTTGATGCAACTCGAACTTTAATCAGGAGTTTATCAACAAAAATAAGGATAGCAATTCAAGTCGTAGACAAGATATCGGTTACCAT AAACAAGATTAGGGATGAAGAGCTATGGCCTCAACTAAATGAATTGATTCAAGGGTTAACCAGAATGTGGAAGAGTATGCTTGAATGTCATCATATTCAG TGCCAAGCAATTAGAGAAGCCAGAGGCTTAGGTCCCCTTGGATCAGGTGAAAAGCCCAGTGATGATCATCTAGATGTCACACTGCAGCTGGGGCATGAGC TTCTTAGTTGGACTTCTAGTTTCTCTAGTTGGATTGGTGCCCAGAGAGGTTATGTGAGAGCCTTGAATAACTGGCTTGTTAAGTGTCTTTTATATGAACC AGAAGAAACACCAGATGGCATAGTTCCTTTCTCGCCTGGTAGGATGGGTGCGCCCCCGGTGTTTGTTATTTGTAATCAGTGGGCACAAGCTATGGATAGA ATATCTGGGAAGGAAGTAATCAACGCCATGCGTATTTTTACGACGAGTGTTTTTCAACTTCGGGAGCATGACAAACTAGAAATGCGTCAGAGATTGGTGA CAGACAAGGATTTGGAGAGAAAAGTCAGAAACTTAGATAGAGAAGATCAGAAGATACAAAAGGAGATTCAGGCATTAGACAAGAAAATAGTCCTGGTTGC TGGGGATGGTAATAGTCTGTCAGTAACTGGAAACATTGTATATCAAAGTGACACTAGTAATAGTAGTCTACAGGGGAGCCTACAATGCATTTTTGAAGCC ATGGAAAGATTCATGGCTGATTCAATGAAGGCTTATGAGGAGCTGTTGCAACGTAGTGAAGAAGAAAGGCGTGCTTGA
AA sequence Show only first row Show all	>Potri.004G182900.8 pacid=42795337 polypeptide=Potri.004G182900.8.p locus=Potri.004G182900 ID=Potri.004G182900.8.v4.1 annot-version=v4.1 MGCTSSKLEDLPAVALCRDRCAFLDEAIHQRYALAEAHVAYIQSLKRIGNSLYVFIEKENFTAGGGGRPMSPKLNLPPNKKSEDLKVVGSSSPKKGHHLS HSSSGSHLHFHSDGDDEDDDDVLHLHRSDNSSPLHGHGEGSGGDDGGGGHIPYMSSDYMNMDQDSYPGGGGTFFHTNYMKNKGATPSVIYEQRPVSSETV HFGESSSPAYYNNYSNSGYAMSNSNPYGYSGYPNYGGGGGGYNGSQNQYGSSSSQPPPEVPSSSKPPPPPPPPPPPGASAWDFLNLFEGYDRNYPQYTPS RDSKELREEEGIPDLEDEDYQHEFVKEVHVDKKYMDGAKKFSQSPVMDDGDGKVEGDTEASASLYQTRPSVATEEDRVAYEVHVVDKKIVDNERSEQRSN AGFKGRGGGPLEVAVEIKIQFERASECGNEIAKMLEVGKLPYQRKHAVSKMLRVTPPLSVVSSQPSTSGSAVAGPPSLEIDEELMVRSKNLSSTLQKLYL WEKKLYQEVKVEEKMRVAHEKKCRKLKRLDERGAEVDKVDATRTLIRSLSTKIRIAIQVVDKISVTINKIRDEELWPQLNELIQGLTRMWKSMLECHHIQ CQAIREARGLGPLGSGEKPSDDHLDVTLQLGHELLSWTSSFSSWIGAQRGYVRALNNWLVKCLLYEPEETPDGIVPFSPGRMGAPPVFVICNQWAQAMDR ISGKEVINAMRIFTTSVFQLREHDKLEMRQRLVTDKDLERKVRNLDREDQKIQKEIQALDKKIVLVAGDGNSLSVTGNIVYQSDTSNSSLQGSLQCIFEA MERFMADSMKAYEELLQRSEEERRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35240			Protein of unknown function (D...		Potri.004G182900 [exp]	0	1
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.010G052400 [exp]	7.14	0.7584
AT5G66560			Phototropic-responsive NPH3 fa...		Potri.007G033900 [exp]	9.38	0.7436
AT5G05800			unknown protein		Potri.006G116400 [exp]	12.24	0.6685
AT2G37050			Leucine-rich repeat protein ki...		Potri.006G132100 [exp]	13.41	0.7074
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Potri.008G118300 [exp]	21.21	0.6960	PAN.2
AT3G63300		FKD1	FORKED 1 (.1.2)		Potri.002G049200 [exp]	26.45	0.7188
AT5G35670		IQD33	IQ-domain 33 (.1)		Potri.014G161000 [exp]	29.86	0.7236
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057600 [exp]	31.67	0.6783	CCRL2,CCR.9
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Potri.013G112500 [exp]	34.35	0.6750	Pt-CDPK2.4,CPK4
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.018G047800 [exp]	44.72	0.6784

Compare expression of checked genes

Potri.004G182900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.