Plant FIBer expression Database

Potri.004G182966 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G182966.1 pacid=42796075 polypeptide=Potri.004G182966.1.p locus=Potri.004G182966 ID=Potri.004G182966.1.v4.1 annot-version=v4.1
ATGTTATGTATACAGTACTGTGCCTGTCCTCGTCTCATTACGCTAAGAATGTTATGTATACAGAGTACTGTGCCTCGTGATGGCCTTGCCAGCACCAACA
GTTGGCTTATTTGCTGTCTTCTTCCCTCCATTCGTCCAAGAAATTCATTTGTTTTGGCTCCCATTGCTATTCTGCAGAAGATCGAGCTAGCTCATGCGAC
GTTTACAGTGCCAGTAGCAGCGTTGATAGTTCCCTTTCTTGCACCATGCATGCTTTTAGGGCCAGTCCCTGAACTGCTAGCCTCAAACCCCCCCCCCCCC
CCCCCCCCATGTTCATCCTTCTTGACACAGTAA
AA sequence
>Potri.004G182966.1 pacid=42796075 polypeptide=Potri.004G182966.1.p locus=Potri.004G182966 ID=Potri.004G182966.1.v4.1 annot-version=v4.1
MLCIQYCACPRLITLRMLCIQSTVPRDGLASTNSWLICCLLPSIRPRNSFVLAPIAILQKIELAHATFTVPVAALIVPFLAPCMLLGPVPELLASNPPPP
PPPCSSFLTQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G182966
[exp]
0 1
AT5G06270 unknown protein Potri.016G073400
[exp]
3.46 0.8393
AT5G49700 AT-hook Predicted AT-hook DNA-binding ... Potri.001G275700
[exp]
18.13 0.8379
AT3G06470 GNS1/SUR4 membrane protein fam... Potri.003G019800
[exp]
19.94 0.8781
AT1G09390 GDSL-like Lipase/Acylhydrolase... Potri.005G006500
[exp]
21.63 0.8223
AT5G51800 Trihelix Protein kinase superfamily pro... Potri.012G132300
[exp]
25.92 0.8071
AT1G11600 CYP77B1 "cytochrome P450, family 77, s... Potri.004G018800
[exp]
26.38 0.8751 Pt-CYP77.2
AT5G04470 SIM SIAMESE, cyclin-dependent prot... Potri.010G231700
[exp]
28.84 0.8550
AT1G27360 SBP SPL11 squamosa promoter-like 11 (.1.... Potri.002G142400
[exp]
36.66 0.7333
AT4G14930 Survival protein SurE-like pho... Potri.010G088100
[exp]
38.40 0.8420
AT1G02550 Plant invertase/pectin methyle... Potri.014G119400
[exp]
43.58 0.8167

Potri.004G182966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.