Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35250 651 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G32100 59 / 2e-09 ATPRR1 pinoresinol reductase 1 (.1) AT5G18660 58 / 5e-09 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02240 50 / 1e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G16720 47 / 2e-05 HCF173 high chlorophyll fluorescence phenotype 173 (.1) AT2G37660 46 / 3e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G13660 45 / 3e-05 ATPRR2 pinoresinol reductase 2 (.1) AT4G31530 45 / 5e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143000 [exp] 688 / 0 AT4G35250 642 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G204900 [exp] 65 / 2e-11 AT5G18660 610 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G133300 [exp] 56 / 1e-08 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.001G133200 [exp] 56 / 2e-08 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1) Potri.003G100200 [exp] 53 / 1e-07 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.014G000400 [exp] 53 / 3e-07 AT1G16720 863 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.007G003500 [exp] 49 / 5e-06 AT1G16720 852 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.006G086800 [exp] 48 / 5e-06 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147702 [exp] 45 / 5e-05 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003328 [exp] 645 / 0 AT4G35250 653 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022632 [exp] 634 / 0 AT4G35250 640 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012145 [exp] 64 / 5e-11 AT1G32100 419 / 2e-148 pinoresinol reductase 1 (.1) Lus10012143 [exp] 60 / 1e-09 AT1G32100 447 / 1e-159 pinoresinol reductase 1 (.1) Lus10010403 [exp] 56 / 1e-08 AT1G32100 446 / 1e-158 pinoresinol reductase 1 (.1) Lus10037912 [exp] 56 / 2e-08 AT5G18660 577 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038638 [exp] 56 / 4e-08 AT5G18660 574 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010846 [exp] 49 / 5e-06 AT2G37660 451 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024383 [exp] 47 / 1e-05 AT2G37660 458 / 1e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004028 [exp] 46 / 3e-05 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05368 [poplar] [flax] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Potri.004G183100.1 pacid=42795501 polypeptide=Potri.004G183100.1.p locus=Potri.004G183100 ID=Potri.004G183100.1.v4.1 annot-version=v4.1 ATGGCGTGCAAGCTCCCAGCTCAGCTAGCAACCCCAGGAAAACTCCATCACCACTGTCAATTCACCATCACATCCGCCTTTATTCCCCTCTCCTGGCGTA GGACTCTGTCACCAGAACCTCTCCTCTCTCTTTCCACCTCATTTCCTTCAGGGAAGTGTAATGGAAAGCAACTTGTGACATGTAGTGCTATTGGGACTGC AGAGGCAACAGGGGCAGTGAATTTAGGACCAGGGACTCCAGTTAGACCAACTAGTATACTAGTTGTAGGAGCCACTGGTACTTTAGGCAGGCAAATTGTG AGAAGAGCCCTTGATGAGGGCTATGATGTTAGGTGTCTTGTTAGGCCTAGACCTGCCCCTGCTGATTTCCTTCGTGATTGGGGTGCCATTGTTGTCAATG CAGATCTTAGTAAGCCTGAGACTATACCTGCAACAATGGTTGGGGTTCATACAGTTATTGACTGTGCTACTGGGCGTCCCGAAGAGCCCATTAAAACGGT AGATTGGGAAGGAAAAGTTGCTCTAATACAATGTGCAAAAGCAATGGGAATCCAGAAGTATGTGTTCTATTCTATCCACAACTGTGACAAGCATCCTGAA GTTCCCCTAATGGAGATTAAATATTGCACTGAGAAGTTTCTTCAGGACTCTGGTCTACCCCACGTCATTATCCGTCTATGTGGTTTCATGCAAGGCCTTA TTGGGCAATATGCAGTACCTATTCTAGAAGAGAAATCTGTATGGGGAACAGATGCCCCAACAAGAATTGCATACATGGATACCCAGGATATAGCTCGACT AACACTTGTAGCATTACGGAATGAGAAAATTAATGGGAAGCTCCTCACCTTTGCTGGCCCTCGAGCTTGGACTACTCAAGAGGTCATAACATTGTGCGAG AGGCTTGCGGGGCAGGATGCAAATGTTACTACTGTCCCAGTTTCTGTCTTAAGAGTCACTCGTCAGTTGACTCGGTTGTTTGAGTGGACAAATGATGTTG CTGATAGGCTAGCATTTTCAGAGGTCCTTACAAGTGATGTTGTTTTTTCCGTTCCGATGAATGAGACATATAGTCTTCTAGGGGTGGAGCAGAAAGATAT AGTTACACTGGAGAAGTATTTGCAGGATTATTTCACGAACATTTTGAAGAAATTGAAAGACCTCAAAGCACAATCAAAACAAAGCGACATCTACTTCTGA
AA sequence Show only first row Show all	>Potri.004G183100.1 pacid=42795501 polypeptide=Potri.004G183100.1.p locus=Potri.004G183100 ID=Potri.004G183100.1.v4.1 annot-version=v4.1 MACKLPAQLATPGKLHHHCQFTITSAFIPLSWRRTLSPEPLLSLSTSFPSGKCNGKQLVTCSAIGTAEATGAVNLGPGTPVRPTSILVVGATGTLGRQIV RRALDEGYDVRCLVRPRPAPADFLRDWGAIVVNADLSKPETIPATMVGVHTVIDCATGRPEEPIKTVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPE VPLMEIKYCTEKFLQDSGLPHVIIRLCGFMQGLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTLVALRNEKINGKLLTFAGPRAWTTQEVITLCE RLAGQDANVTTVPVSVLRVTRQLTRLFEWTNDVADRLAFSEVLTSDVVFSVPMNETYSLLGVEQKDIVTLEKYLQDYFTNILKKLKDLKAQSKQSDIYF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35250			NAD(P)-binding Rossmann-fold s...		Potri.004G183100 [exp]	0	1
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Potri.007G033700 [exp]	1.00	0.9896	PSBO.2
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Potri.012G106600 [exp]	1.41	0.9808
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Potri.006G034300 [exp]	1.73	0.9804
AT1G31920			Tetratricopeptide repeat (TPR)...		Potri.001G135400 [exp]	4.12	0.9666
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Potri.010G150300 [exp]	4.89	0.9795
AT4G16410			unknown protein		Potri.006G017500 [exp]	6.70	0.9761
AT4G01150			unknown protein		Potri.002G166800 [exp]	7.34	0.9746	CAM2.2
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Potri.007G105900 [exp]	11.31	0.9742
AT3G61470		LHCA2	photosystem I light harvesting...		Potri.003G171500 [exp]	11.40	0.9712	LHCA2.1,Lhca2-2
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Potri.011G003800 [exp]	12.12	0.9743

Compare expression of checked genes

Potri.004G183100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.