Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17120 318 / 3e-107 LYM2 lysm domain GPI-anchored protein 2 precursor (.1) AT1G21880 147 / 1e-40 LYM1 lysm domain GPI-anchored protein 1 precursor (.1.2) AT1G77630 142 / 1e-38 LYM3 lysin-motif \(LysM\) domain protein 3, Peptidoglycan-binding LysM domain-containing protein (.1) AT2G23770 66 / 1e-11 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143300 [exp] 504 / 2e-180 AT2G17120 311 / 1e-104 lysm domain GPI-anchored protein 2 precursor (.1) Potri.005G176700 [exp] 142 / 9e-39 AT1G21880 548 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Potri.002G084800 [exp] 141 / 3e-38 AT1G21880 554 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Potri.010G078700 [exp] 61 / 6e-10 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 59 / 3e-09 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.005G128501 [exp] 55 / 2e-08 AT2G23770 71 / 4e-14 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160501 [exp] 52 / 1e-07 AT2G23770 66 / 3e-12 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G085350 [exp] 49 / 1e-06 AT2G23770 125 / 7e-33 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 47 / 1e-05 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023945 [exp] 367 / 2e-126 AT2G17120 280 / 4e-92 lysm domain GPI-anchored protein 2 precursor (.1) Lus10014441 [exp] 375 / 3e-122 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10003326 [exp] 342 / 9e-117 AT2G17120 255 / 1e-82 lysm domain GPI-anchored protein 2 precursor (.1) Lus10022630 [exp] 342 / 2e-116 AT2G17120 255 / 1e-82 lysm domain GPI-anchored protein 2 precursor (.1) Lus10026372 [exp] 314 / 2e-105 AT2G17120 249 / 3e-80 lysm domain GPI-anchored protein 2 precursor (.1) Lus10014442 [exp] 203 / 3e-64 AT2G17120 223 / 2e-72 lysm domain GPI-anchored protein 2 precursor (.1) Lus10023946 [exp] 144 / 1e-42 AT2G17120 138 / 6e-41 lysm domain GPI-anchored protein 2 precursor (.1) Lus10025643 [exp] 148 / 1e-40 AT1G21880 547 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Lus10018191 [exp] 147 / 1e-40 AT1G21880 550 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Lus10042285 [exp] 107 / 2e-25 AT1G73470 152 / 8e-42 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [poplar] [flax] LysM PF01476 [poplar] [flax] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Potri.004G183500.4 pacid=42793944 polypeptide=Potri.004G183500.4.p locus=Potri.004G183500 ID=Potri.004G183500.4.v4.1 annot-version=v4.1 ATGGGTTTCCATTTCACTCCGCTGCTTCTCACCCTACTCTTATTCTCCACGCTCCACTCAAGATCTTCTTCCCAAACCTTCAAATGTAGCACACCCTCCA CGTGCCATTCCCTCATTGACTACATCTCTCCAAACGCAACAACTTTCTCCCACATCAAAACCCTCTTCTCCGTCAAGAACATACACTCCATCTTAGCTGC CAACAACCTCCCTCTCTCCACGTTACCAAACTCTACCATACCTGCAAACCAGACCATCAAAATCTCATTTCCTTGCATGTGCATCAACAACACTGGTCAC TCAAACAAGCAACCAATCTACACCGTTCAAAAGGATGATGGGCTTTTTCATATTGCAGCAGAAGTTTTCTCAGGATTGGTAACATACCAAGAAATTGCTG CTGTTAATAATATATCAGACGTTAATCTGATTAAGGTTGGGCAGAAATTGTGGATTCCTTTACCTTGTAATTGTGATGATGTTGATGGGGTCAAAGTTGT CCATTATGGACACGTGGTGGAAGCTGGCAGTTCTTTGGAGTTGATTGCTCAAGAATATGGGACCAGTACAGATACACTAGTGAAGCTTAATGGGGTTAAT GATAGTTCTCTCTTAGCTGGTCAAGTTCTTGATGTCCCTCTCCAAGCTTGCAATTCATCGGTGAGAAGTGACTCAGTAGATTATCCACTACTTGTTCCTA ACAACACCTATTTCTTCACTGCTAACAATTGTGTTAAATGCAAGTGTGATGCTGCAAACAACTGGACATTACAATGTGAAGCATCTGGGATTAAACCATC CAACTGGTCAACTTGCCCTGTTATGCAATGTGAAGGTGGCTTGTTATCCATCGACAACTCGACAACTTCTGGTTGCAACATCACAACCTGTGCCTATGCC GGTTTTAACAAGAACCAAAGCATCTTCACAACTCTCGCCACACGGTCCACTTGTCCAGTTACCGCAGCTCCCGGAAATTATGCTTCAAGGACTGGTTTGA GTTGGAACTACTTGTTCATCTCTCTTCACCTGATTCTTCTTCTTGTGTATCATCTTTGA
AA sequence Show only first row Show all	>Potri.004G183500.4 pacid=42793944 polypeptide=Potri.004G183500.4.p locus=Potri.004G183500 ID=Potri.004G183500.4.v4.1 annot-version=v4.1 MGFHFTPLLLTLLLFSTLHSRSSSQTFKCSTPSTCHSLIDYISPNATTFSHIKTLFSVKNIHSILAANNLPLSTLPNSTIPANQTIKISFPCMCINNTGH SNKQPIYTVQKDDGLFHIAAEVFSGLVTYQEIAAVNNISDVNLIKVGQKLWIPLPCNCDDVDGVKVVHYGHVVEAGSSLELIAQEYGTSTDTLVKLNGVN DSSLLAGQVLDVPLQACNSSVRSDSVDYPLLVPNNTYFFTANNCVKCKCDAANNWTLQCEASGIKPSNWSTCPVMQCEGGLLSIDNSTTSGCNITTCAYA GFNKNQSIFTTLATRSTCPVTAAPGNYASRTGLSWNYLFISLHLILLLVYHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Potri.004G183500 [exp]	0	1
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.014G104600 [exp]	2.44	0.8355
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Potri.004G189000 [exp]	4.47	0.8275	Pt-ATCSLA02.2
AT5G60920		COB	COBRA-like extracellular glyco...		Potri.015G060000 [exp]	4.89	0.8199
AT2G22900			Galactosyl transferase GMA12/M...		Potri.014G006100 [exp]	5.47	0.8295	GT6.2
					Potri.010G001200 [exp]	5.47	0.8073
AT1G11820			O-Glycosyl hydrolases family 1...		Potri.011G006100 [exp]	8.48	0.8111
AT5G45470			Protein of unknown function (D...		Potri.015G113400 [exp]	10.24	0.8267
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Potri.017G092500 [exp]	12.12	0.7783
AT4G25240		SKS1	SKU5 similar 1 (.1)		Potri.015G127200 [exp]	12.32	0.7807	SKS1.3
AT3G51740		IMK2	inflorescence meristem recepto...		Potri.016G126300 [exp]	12.36	0.8106	Pt-RHG1.4

Compare expression of checked genes

Potri.004G183500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.