Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38380 604 / 0 MATE efflux family protein (.1) AT2G38330 409 / 6e-137 MATE efflux family protein (.1) AT1G51340 330 / 1e-106 MATE efflux family protein (.1.2) AT3G08040 323 / 1e-103 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT2G21340 57 / 4e-08 MATE efflux family protein (.1.2) AT4G39030 49 / 9e-06 SCORD3, SID1, EDS5 SALICYLIC ACID INDUCTION DEFICIENT 1, susceptible to coronatine-deficient Pst DC3000 3, ENHANCED DISEASE SUSCEPTIBILITY 5, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143400 [exp] 942 / 0 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 622 / 0 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.016G126000 [exp] 400 / 3e-133 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.009G061100 [exp] 344 / 1e-111 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.001G266900 [exp] 342 / 2e-110 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.016G053600 [exp] 335 / 2e-108 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.009G053700 [exp] 328 / 1e-105 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.009G122600 [exp] 64 / 1e-10 AT2G21340 646 / 0.0 MATE efflux family protein (.1.2) Potri.009G122900 [exp] 59 / 7e-09 AT2G21340 684 / 0.0 MATE efflux family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023943 [exp] 677 / 0 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10014440 [exp] 618 / 0 AT4G38380 527 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 598 / 0 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10014441 [exp] 569 / 0 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10012227 [exp] 400 / 8e-133 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10039609 [exp] 330 / 4e-106 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10042365 [exp] 319 / 3e-102 AT1G51340 571 / 0.0 MATE efflux family protein (.1.2) Lus10026303 [exp] 317 / 2e-101 AT1G51340 564 / 0.0 MATE efflux family protein (.1.2) Lus10029517 [exp] 318 / 2e-100 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10016412 [exp] 308 / 9e-98 AT1G51340 569 / 0.0 MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.004G183600.2 pacid=42795603 polypeptide=Potri.004G183600.2.p locus=Potri.004G183600 ID=Potri.004G183600.2.v4.1 annot-version=v4.1 ATGGCTAGTACTGGACAATTCAGTGGCAAATCACTTTACAAAGGATTGACAAGTAGAAGTAGTGGTGAACAGAGTCGATTAACAAAAGGAAAAATGAAAT TTTGTTTCTTGAATCAAAGTAAAGTTCCTAGAGGATTGGGGGGTGGAGATATTGTGTCGAGAAAGTGTCATTTGTGTGCCGAGCAAAAGAATTCTTTGTC GCCTCTGGTGATTAGACATCGGAAGGCGCGATTTGGGGTGGTTTGTTGTCAGTCAAGTTCTGGGTATGGTGTGGAATCCACTGATGAGCAGGAGAGATTG GTTTTAGAAGAAAACAAGCGCGGCATTATCAATGGTTCGAGAGGTGAAGAAAGTGAGTCAATTGGGGTTCTGATCAATCAACCACGTTCTTCAGATGTCA GATGCGAGCTTATAATGCTTTCTTTGCCTGCAATTGCTGGACAGGCTATTGATCCTTTTTCCCAGTTGATGGAGACAGCGTATATTGGCAGATTAGGTCC AGTAGAGTTGGGTTCTGCTGGTGTTTCTATTATGATATTTAACAATGTATCAAAGCTATTCAATATTCCTCTTCTAAGTGTGGCAACATCTTTTGTGGCT GAAGACATTGCAAAGAATGCAACCAAAGATTCTATTTCAGAAAATGGCATCCAAGAAGACAGTACTAATGGTAAACCTATTGGGATGGTTGAAAGAAAGC AACTATCCTCTGTGTCCACTGCTTTAATATTAGCTATCGGGATAGGAATCTTTGAGGCTGTAGCCTTGTCTCTGGGATGCGGATCATTTCTCAACTTGAT GGGCATAACTGTGGATTCACCAATGCGCATTCCTGCAGAACGATTTCTTTCACTAAGAGCCCTTGGTGCTCCAGCTGTTGTGGTCTCCTTGGCTCTTCAA GGCATTTTTCGTGGCTTCAAGGATACTAAAACTCCTGTATTTTGTCTTGGCTTGGGTAATTTATCAGCTATATTTTTATTTCCCTTACTCATGTATTATC TTAAGTTGGGTGTGACTGGAGCAGCTATTTCCACAGTAGTGTCACAATACCTTGTCACCTTTTTGATGGTTTGGCAACTAAATAAGAGGGTTATATTATT ACCTCCAAAGGTTGGAGAGCTCCAATTTGGTGTCTACATGAAATCTGGTGGCTTTCTTATTGGAAGAACTCTTGCTGTTTTAACTACCATGACATTGGCC ACTTCAATGGCGGCTCGTCAAGGTGCAGTAGCAATGGCTGCACATCAGATATGTATGCAAATATGGTTGGCTGTTTCTCTTCTCACAGATGCACTGGCTT CATCTGGTCAGGCTCTAATTGCAAGTTACTCATCGGAAGGTGACCACAAAACTGTGAAAGAAGTCACAAAATTTGTTTTGAAGATTGGACTAGTTGTTGG TGTTTCATTGGCTGCAATTCTGGGTGTATCTTTTGGTTCCATAGCCACCTTGTTCACCAAGGATGCTGATGTATTAGGAATTGTAAGAACTGGGATATTG TTTGTTAGTGCTAGTCAACCTATCAATGCCCTAGCTTTTATTTTTGATGGTCTTCATTATGGTGTTTCTGACTTTCCATATGCGGCGAAATCTATGATGT TGGTTGGATTAATATCATCTGCCTTTCTGCTTTATGCTCCAATTACGGGGCTCCCTGGGGTTTGGTCTGGTTTGGCTCTCTTCATGGGTTTGCGTACAGC AGCAGGATGTGTGAGATTACTTTCAAAATCTGGTCCATGGTGGTTCATGCACAAGGATTTAGAGACTGTTTAG
AA sequence Show only first row Show all	>Potri.004G183600.2 pacid=42795603 polypeptide=Potri.004G183600.2.p locus=Potri.004G183600 ID=Potri.004G183600.2.v4.1 annot-version=v4.1 MASTGQFSGKSLYKGLTSRSSGEQSRLTKGKMKFCFLNQSKVPRGLGGGDIVSRKCHLCAEQKNSLSPLVIRHRKARFGVVCCQSSSGYGVESTDEQERL VLEENKRGIINGSRGEESESIGVLINQPRSSDVRCELIMLSLPAIAGQAIDPFSQLMETAYIGRLGPVELGSAGVSIMIFNNVSKLFNIPLLSVATSFVA EDIAKNATKDSISENGIQEDSTNGKPIGMVERKQLSSVSTALILAIGIGIFEAVALSLGCGSFLNLMGITVDSPMRIPAERFLSLRALGAPAVVVSLALQ GIFRGFKDTKTPVFCLGLGNLSAIFLFPLLMYYLKLGVTGAAISTVVSQYLVTFLMVWQLNKRVILLPPKVGELQFGVYMKSGGFLIGRTLAVLTTMTLA TSMAARQGAVAMAAHQICMQIWLAVSLLTDALASSGQALIASYSSEGDHKTVKEVTKFVLKIGLVVGVSLAAILGVSFGSIATLFTKDADVLGIVRTGIL FVSASQPINALAFIFDGLHYGVSDFPYAAKSMMLVGLISSAFLLYAPITGLPGVWSGLALFMGLRTAAGCVRLLSKSGPWWFMHKDLETV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38380			MATE efflux family protein (.1...		Potri.004G183600 [exp]	0	1
AT5G35750		AHK2	histidine kinase 2 (.1)		Potri.014G164700 [exp]	10.53	0.6715
AT5G45500			RNI-like superfamily protein (...		Potri.019G036900 [exp]	16.67	0.6602
AT4G14290			alpha/beta-Hydrolases superfam...		Potri.008G200400 [exp]	19.49	0.6044
AT3G03810		EDA30	embryo sac development arrest ...		Potri.013G056200 [exp]	23.66	0.6150
AT3G22430			unknown protein		Potri.009G147201 [exp]	23.66	0.6109
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Potri.003G001000 [exp]	25.74	0.6566	Pt-ARF1.11
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.016G074100 [exp]	33.98	0.6113
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.003G191301 [exp]	36.87	0.6080
AT1G63640			P-loop nucleoside triphosphate...		Potri.001G104000 [exp]	41.27	0.6188
AT4G34660			SH3 domain-containing protein ...		Potri.001G128800 [exp]	45.23	0.5921

Compare expression of checked genes

Potri.004G183600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.