Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32730 104 / 3e-26 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) AT1G04810 98 / 5e-24 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G054400 [exp] 140 / 6e-39 AT2G32730 1642 / 0.0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) Potri.001G314300 [exp] 0 / 1 AT2G32730 1617 / 0.0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007140 [exp] 108 / 1e-27 AT2G32730 1672 / 0.0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) Lus10016681 [exp] 0 / 1 AT2G32730 1602 / 0.0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G183675.1 pacid=42795135 polypeptide=Potri.004G183675.1.p locus=Potri.004G183675 ID=Potri.004G183675.1.v4.1 annot-version=v4.1 ATGCAAAATCTTCTCTGTTTGGGTATCCAAAACCAGCCACTGTTCCTACCACTGCACCTGCTGTGGCACTTCCTCCTGCAGTTCCGTCAACATCAGCCAA GGCTGAAGCTACGGCCAAGGGAAAAGCGGACCAGAAAGCTAATGCTAAAAAGGCAGATGGGAAAGAGTCTTTTCCTGCTGCCAAAGATGCAGAAAAAGGG AAATCATCAACCGACAAAAAACGGCGATCCCATGCAGGTGGATGGCGCAGAAACTGACACCGCAGAACCTGAGCCTTCTTTCGAAATTTTAACCAACCCT GCCAGGGTGGTTCCTGCTCAGGAAAAATTTCTTAAATTTCTTGAAGATAGCAGATATGATCCCGTGAAGTCAGCACCTTCAGGATTTGTCCTCCTGAGTG ATTTGCAGCCAAGTGAGCCTGAGGTGTTTTCATCTAAAAAAAATCCATCTACAGTGTCACTTGCTGCTGGTGATTCAATTACTGGAGAACAAGGTTCGGC AGTCATGGATGTTGACGAGAAACCCGTCTCCTCAAACTTTTAA
AA sequence Show only first row Show all	>Potri.004G183675.1 pacid=42795135 polypeptide=Potri.004G183675.1.p locus=Potri.004G183675 ID=Potri.004G183675.1.v4.1 annot-version=v4.1 MQNLLCLGIQNQPLFLPLHLLWHFLLQFRQHQPRLKLRPREKRTRKLMLKRQMGKSLFLLPKMQKKGNHQPTKNGDPMQVDGAETDTAEPEPSFEILTNP ARVVPAQEKFLKFLEDSRYDPVKSAPSGFVLLSDLQPSEPEVFSSKKNPSTVSLAAGDSITGEQGSAVMDVDEKPVSSNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32730			26S proteasome regulatory comp...		Potri.004G183675 [exp]	0	1
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Potri.002G057800 [exp]	3.00	0.9106	Pt-VCL1.3
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Potri.012G127800 [exp]	3.87	0.9057
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Potri.017G071200 [exp]	7.34	0.9001
					Potri.017G113750 [exp]	7.74	0.9074
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Potri.001G211400 [exp]	9.05	0.8676
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Potri.002G160600 [exp]	11.66	0.8860
AT5G60580			RING/U-box superfamily protein...		Potri.006G024000 [exp]	13.07	0.8972
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Potri.001G156200 [exp]	15.09	0.8817
AT5G01430			Got1/Sft2-like vescicle transp...		Potri.017G036000 [exp]	19.74	0.8747
AT1G18290			unknown protein		Potri.012G045600 [exp]	21.63	0.8906

Compare expression of checked genes

Potri.004G183675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.